PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10426233g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 1021aa MW: 111282 Da PI: 5.5673 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.7 | 1.5e-19 | 67 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdel+v++v+++G++ W+ I++ ++ gR +kqc++rw+++l MA_10426233g0010 67 KGPWTKEEDELIVELVRKYGSKKWSVISQSLP-GRIGKQCRERWHNHL 113 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 119 | 161 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W+++E+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w+ MA_10426233g0010 119 KDAWSQDEEMALIRAHQIYGNK-WAEIAKSLP-GRTDNSIKNHWN 161 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.961 | 42 | 61 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 43 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.439 | 62 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-31 | 64 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-18 | 66 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-18 | 67 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.32E-16 | 69 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 75 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.338 | 118 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-17 | 118 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 119 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.55E-13 | 121 | 161 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 121 | 168 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1021 aa Download sequence Send to blast |
MSVVLLSGRK NSSLWSQRFC LATGLSANMR FGPAMSLGSH GTEYFSDRTD VQCLHRWQKV 60 LNPELVKGPW TKEEDELIVE LVRKYGSKKW SVISQSLPGR IGKQCRERWH NHLNPEIKKD 120 AWSQDEEMAL IRAHQIYGNK WAEIAKSLPG RTDNSIKNHW NSSIKKKLDS YLASGLSIQL 180 PELPTAQPTL LSALSTAAET SSDVVMAGTV GEQQFVCSQE SVSRVGIQSG MLEVATTSTL 240 QLGDTNLDLK KTERDRRLVD EVKDSPNPSL PLCFETDGSV CLTADGMPEF SGVGRDKAAM 300 PMPSYQMNDF LESVISGNAF SVGSPQEVSN AGNLSNCVAS TALGYHSIAP SSDAEHKSSS 360 FIHRYQLSSC CDVAMSSPKA CTSAAFSASW SPLGSGAPDV SLSSFIDKKQ LLCSPEKPVS 420 AIDGGTCSSS EIRHCDELLQ VCLPSSESLK LANQDERPRS TLLSMTADVN RKVVCEIDAG 480 GNPDVQSENS NSESLFYEPP RLSNWDIPFV NCDLINSCGY LHQAYSPLGV RQMIMSSVDC 540 FSPCNGWGSA FNEKSPESIL KSAAKSFTNT PSIVRKRSRD ASTPVDANRN GKAADKVKTH 600 DNFITPGSLT RKYNELLESP DDGISGPGLC QSKRQTLVSP QYCLKTKHFA PVKSMERHLE 660 YASEATKGLD PGYRWSSPSP MKNSGGSESD VRQSNKGVDP SGWKVSNREC TQRDVRDMNK 720 IDHGARMQNM QSYGVLVEQN LNGQQFFQTI GDNSLKFGSP SASTVIPKSH SGRSMGISGK 780 LKVSEGDTEM RASGFVSSPC NITRKMVTTN IESSTVIASA NPLHHAFDID WLNNIPDLDN 840 LSIMGSASGL DKGLGSPIEW KSPWSLDPYF SAQKNSTDTF LEEMGIFLNH EDGTDDALGL 900 IQHLNEHAAS AYLEAEEILA TDPAKEPPSL MVQASPTFQD KTAEDDSSCK ENMFSLDTTF 960 GADNSSPLFS CLSPFPVDFA QVYNTPCRSG GFSGGAETNQ NFAGNTNDFS SPSLYLRKEF 1020 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-62 | 44 | 168 | 35 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-62 | 44 | 168 | 35 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112946 | 0.0 | BT112946.1 Picea glauca clone GQ03323_C20 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 2e-73 | myb domain protein 3r-4 |