PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10425932g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||
Protein Properties | Length: 272aa MW: 31026.3 Da PI: 9.525 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 195 | 253 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r ++dp++v++tYeg H h+ MA_10425932g0020 195 LDDGYRWRKYGQKSVKNNLYPRSYYRCTHQTCSVKKQVQRLSRDPEIVVTTYEGIHMHP 253 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-33 | 180 | 254 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-28 | 187 | 254 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.057 | 190 | 255 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-38 | 195 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-26 | 196 | 253 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MNPDLSSTAN SSCFPRINGG INGLSSSKTH SPPAPSHSLT EFMQTQSQAH DQGKNEHVNS 60 MKNIQQQQQD QMNQTACNPN IWKPSWLSQT TTSDKEEAVQ RREFNVPGGF PESNSSGDTQ 120 ARLSAMRGIT GLEGQYFPAV REEHNKGISE SERLQLGEND GGNVKDNRSR SRGKLEKRIR 180 RPRYAFQTRS QVDILDDGYR WRKYGQKSVK NNLYPRSYYR CTHQTCSVKK QVQRLSRDPE 240 IVVTTYEGIH MHPSEKSMES FDHILNQMQF LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-25 | 187 | 252 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-25 | 187 | 252 | 9 | 74 | Probable WRKY transcription factor 4 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111843 | 0.0 | BT111843.1 Picea glauca clone GQ03304_E19 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NZ05 | 0.0 | A9NZ05_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 6e-49 | WRKY DNA-binding protein 75 |