PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10425867g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 419aa MW: 47388.2 Da PI: 9.8419 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 3e-18 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ MA_10425867g0020 4 RGHWRPAEDEKLRELVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59 | 1e-18 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ MA_10425867g0020 56 RRPFTEEEEERLLAAHRLHGNK-WAMIARLFP-GRTDNAVKNHWHV 99 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.724 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.39E-29 | 3 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-17 | 4 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-14 | 7 | 48 | No hit | No description |
SMART | SM00717 | 9.2E-16 | 55 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.5 | 55 | 105 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.1E-15 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 58 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-7 | 67 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MCPRGHWRPA EDEKLRELVE QYGPQNWNSI AEKLQGRSGK SCRLRWFNQL DPRINRRPFT 60 EEEEERLLAA HRLHGNKWAM IARLFPGRTD NAVKNHWHVI MARKFRERSR IYGKRRSSCG 120 HLMRKARPHS AHAPEHIEEN SLSTFIDMYY RGCHEDAGIS SSNILGRRPR KLPHDSTLEN 180 MNSQIHGNGL ILNPSGRSER LEVVTPQGRP ASTESEAYKN RILDSLCEIG INNHVQSRKN 240 LQDFFFQQSM RPAASKVPSA TSWLPIFSGS TLPKAPDLAQ GEFRPDHFPC PEPGKINGCL 300 KIPPIYNYSS SSFRHRTTDH RGPGAVAEAK EAQLISPELL KGSTASSYSP ASLQLSINPQ 360 SSPSSTFKEA KVVHQNKSHN GRDRNPYNIL ESQVADHEIT DPDQRKEAAF IDFLGVGAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 4 | 104 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF601066 | 0.0 | EF601066.1 Picea glauca R2R3-MYB transcription factor MYB3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q27IN9 | 0.0 | Q27IN9_PINTA; R2R3-MYB transcription factor MYB3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-57 | myb domain protein 105 |