PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_103616g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 646aa    MW: 70386.9 Da    PI: 6.4414
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_103616g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29360418259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt++  Cpv+k+v+r aed +++++tYeg+Hnh 
  MA_103616g0010 360 SDGCQWRKYGQKMAKGNPCPRAYYRCTMSpCCPVRKQVQRLAEDRSILITTYEGSHNHM 418
                     7***************************9899**************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-31344419IPR003657WRKY domain
SuperFamilySSF1182904.32E-26352420IPR003657WRKY domain
PROSITE profilePS5081127.921354420IPR003657WRKY domain
SMARTSM007747.0E-34359419IPR003657WRKY domain
PfamPF031067.9E-26361417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MMNGAGRFEH KATGIDLSVK LEEDDGGRSL QDNGSHEEEK DNGYDNRAKD FFPHEVGRLS  60
FRLLPVDGES KAEDGPGDMM SQGPEDEDDK PAINVSTGLR LVTAQARNAA SDRSTVEMED  120
CASPINSQET SNPNEMDGEP NSELVAVQKE LNRMNEENQR LRFMLNQINS SYNNLQLQLA  180
SLMKQQPQNY GHAVREQVHK EEKLNIFRGL TGNNIGEAAD DQTPIQRQFL EIKDLSRLNS  240
GTNAQEDSHT SEARRIHGEN DQEESKALLT FNHIDNKHAR DHDNHGSTPK GHDSPDRTPS  300
PHPSPSQHEN GGTPQREGSL DRRSPGWVPN KMQKIVDQTD ATIRKARVSV RARTESPMIS  360
DGCQWRKYGQ KMAKGNPCPR AYYRCTMSPC CPVRKQVQRL AEDRSILITT YEGSHNHMLP  420
PAATAMASTT AAAASMLLSG SSTSADNIAL NASFMAGALM QHPCNTSTAS ISASAPFPTI  480
TLDLTHNPNQ MVTAPGHMAA SNPRALAGLQ AHAMPFVGIP HQFPTTTPQG GLYHGQSIYN  540
APSMFAPLAG QMQRPQQPMM PTPSKLNIQP GQQQQQQQQQ PSFIDTVSAA TAAITSDPNF  600
TAALAAAITS LINNNNNANS ISKPNSSQAV NPSPQVAAHV KTDHSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22346422176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031270.0BT103127.1 Picea glauca clone GQ0207_A12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QNA71e-178A0A0C9QNA7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18796_2280 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.17e-71WRKY family protein