PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10343854g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ERF

Protein Properties

Length: 179aa MW: 20045.6 Da PI: 5.8186

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10343854g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.5	8e-14	23	72	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r +k +g Wv+eI+ p+ + r +lg++ t+e+Aa+a++ +l+g MA_10343854g0010 23 QFRGIRMRK-WGIWVSEIWMPK----StDRLWLGSYNTPEKAARAYDFVVCCLRG 72 69***99.******84....35*****************88888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.1E-26	22	81	IPR001471	AP2/ERF domain
SMART	SM00380	5.8E-29	23	86	IPR001471	AP2/ERF domain
CDD	cd00018	8.33E-26	23	82	No hit	No description
PROSITE profile	PS51032	19.875	23	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-17	23	81	IPR016177	DNA-binding domain
PRINTS	PR00367	1.6E-7	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-7	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MAKPSQNQNG RSKPKNCSLK SRQFRGIRMR KWGIWVSEIW MPKSTDRLWL GSYNTPEKAA 60 RAYDFVVCCL RGSKAKLNFP HTPPEIPCAS SLSLPQIQAS TAKFASEEFW LPLEDDAAFS 120 SSSSGSEAEC SNDGQEIWAE KGSAFWDSVL LENMESGKSL NLNDFPPLDE SLDYFGVHL

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103899	0.0	BT103899.1 Picea glauca clone GQ02803_N18 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010273874.1	3e-33	PREDICTED: ethylene-responsive transcription factor RAP2-9-like
Swissprot	Q9S7L5	2e-30	ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBL	A9NQM1	9e-77	A9NQM1_PICSI; Uncharacterized protein
STRING	XP_010273874.1	1e-32	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74930.1	9e-33	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HY, et al. ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element. New Phytol., 2016. 211(2): p. 599-613 [PMID:26974851] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]