PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_103312g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 506aa    MW: 56992.9 Da    PI: 5.0809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_103312g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.43e-321562901128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                     lp+G++F+P++e+l+ ++L++kv   +      ++ +   ++ev +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r +++ +W++tg
  MA_103312g0010 156 LPAGVKFDPSEEQLL-RHLAAKVGIGNarphslINDFILtLEEVdGICYTHPENLP-GVKQDGSYSHFFHRTTKAYTTGTRKRRRIDKFRWHKTG 248
                     799************.99****988886666653333344999966**********.677888899***************************** PP

             NAM  88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     ++k+v++ +ge++g+kk++ +   +++ +k+ekt+Wvmh+y+l
  MA_103312g0010 249 STKKVYE-NGEQIGCKKIMGLEmtSAKGSKPEKTNWVMHQYHL 290
                     *******.999********9985555777788*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-34147309IPR003441NAC domain
PROSITE profilePS5100529.445156309IPR003441NAC domain
PfamPF023653.5E-12157290IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MPFMQATWTQ TERSTGVAVG VENETQIMIF TMPFVDANWM VYGRRSFLLR SGYFMGSRPM  60
TSMDCEHVRK AKRKVLPKRD GLKGGQRFVE LNHSFDTTIR LGMAENNSTL DDLCISMIGY  120
VLNWIESSWM WMVRGRFNYW IMGISPSDVT QEWPGLPAGV KFDPSEEQLL RHLAAKVGIG  180
NARPHSLIND FILTLEEVDG ICYTHPENLP GVKQDGSYSH FFHRTTKAYT TGTRKRRRID  240
KFRWHKTGST KKVYENGEQI GCKKIMGLEM TSAKGSKPEK TNWVMHQYHL GTEDDEKEGE  300
FVVSKIKYKT DSGIPQEDAG TSNGKGDPPT PTTSTPPQPP PEKQYTCFDR IEEEHLFCAS  360
SPQAADLYAT IHRPSKPNET ECDGQTYLPD ATSLWAGESQ YFEDSQEQMV GLFSCQEQMV  420
GLFSCQEILE NQSCQENAEG TNNIPGLSDC GRIGGNTLGK EMHQSSYCDL ANIDFDTPPD  480
GPILDDSQFG SQESLLGWLN NFGDSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237RKRRR
2234238KRRRI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6766200.0EF676620.1 Picea sitchensis clone WS02744_L04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627944.14e-93SUPPRESSOR OF GAMMA RESPONSE 1 isoform X4
RefseqXP_020531159.14e-93SUPPRESSOR OF GAMMA RESPONSE 1 isoform X5
TrEMBLB8LLI00.0B8LLI0_PICSI; Uncharacterized protein
STRINGEOY021452e-92(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-65NAC family protein