PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_102992g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 296aa    MW: 34852.2 Da    PI: 7.2952
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_102992g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-0766109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT  +   +v+a++++G ++ k+Ia++m  g+t++++  + + +
   MA_102992g0010  66 NWTRRDFNTFVRACEKYGRNDIKSIAAEME-GKTEEEVERYANVF 109
                      79999999**********************.*******9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129317.51662114IPR017884SANT domain
SMARTSM007171.7E-863112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2963117IPR009057Homeodomain-like
CDDcd001672.79E-866110No hitNo description
SuperFamilySSF466893.73E-1566116IPR009057Homeodomain-like
SuperFamilySSF466891.97E-44118240IPR009057Homeodomain-like
PfamPF091111.1E-45120230IPR015195SLIDE domain
Gene3DG3DSA:1.10.10.609.8E-43151248IPR009057Homeodomain-like
SMARTSM0071720165226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016818Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDDNAELYDF DDEKQTHQRN QAKDTVGEGD DIEGFYITTA ITDVGEPLTV DEQEEKEQLL  60
EEGFSNWTRR DFNTFVRACE KYGRNDIKSI AAEMEGKTEE EVERYANVFK ERYKELNDYD  120
RIVKNIERGE ARISRKDEIM KAIGKKLDRY KNPWLELKIQ YGQNKGKLYN EECDRFMLCM  180
VHKLGYGNWD ELKAAFRMSP LFRFDWFVKS RTSNELARRC DTLIRLVERE NQEVDERERQ  240
ARKDKKQLAK SMAPAKRPVP KSLVTESTPS TGGMSAKKRK QSSMDDFLNS QGKKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ofc_X2e-714223188280ISWI PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277295KRKQSSMDDFLNSQGKKRR
Functional Description ? help Back to Top
Source Description
UniProtPossesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin in vitro (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1239160.0BT123916.1 Picea sitchensis clone WS04718_L06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776232.11e-149ISWI chromatin-remodeling complex ATPase CHR11-like
RefseqXP_029120464.11e-149probable chromatin-remodeling complex ATPase chain isoform X2
SwissprotQ7G8Y31e-131ISW2_ORYSJ; Probable chromatin-remodeling complex ATPase chain
TrEMBLA0A2H3WZY41e-147A0A2H3WZY4_PHODC; ISWI chromatin-remodeling complex ATPase CHR11-like
STRINGXP_008776232.11e-148(Phoenix dactylifera)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]