PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10293408g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 509aa    MW: 56506.8 Da    PI: 5.7458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10293408g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.4e-35151062102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sws  +nsf+v++++ef++ +Lp+yFkhsnf+SFvRQLn+YgF+k++ e+         weF+++ F kg+++ll
  MA_10293408g0010  15 FLTKTYDMVDDPATNAMVSWSPGSNSFIVWNPTEFSRVLLPTYFKHSNFSSFVRQLNTYGFHKIDPER---------WEFANEGFLKGHRHLL 98 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  MA_10293408g0010  99 KNIHRRKP 106
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.71E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-3811104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEGSQNGSSN GPPPFLTKTY DMVDDPATNA MVSWSPGSNS FIVWNPTEFS RVLLPTYFKH  60
SNFSSFVRQL NTYGFHKIDP ERWEFANEGF LKGHRHLLKN IHRRKPVHSH SQQQQKGESL  120
SGGACVEIKQ LEDETEKLRQ EKQGLVMELV RLKQHQQGTE FDLQSLEERL QLMEQRQQRM  180
MAFLAKAVQN PNFVAQLVQH HDKIAHIATT NKKRRLPKHD EVLEIGENGC TSSQIVRYDP  240
GKGDAFNRDS PDKLETSMDA FKNFFDDVPV DARDKAKDCG SPQSHSSEPT LTEMHGKSCF  300
PDMPVSLGVS DIYTSSALSD LNSSSRLPEM SISLRSQDVQ ASTGLVGSLR SDVLCNLSLS  360
PHSSSLELSK IDDAGKSVQS GSSENRSFIG SKIGSNDAID MEVGFPYGAA KTTLQEGSIN  420
SKSRGTGLGG TGKGMGTETT KKRINDVFWE QFLTESPQPI DTEGTDSESQ ESSKDQDDVV  480
PEYSNFCNRR ENLDQLTLQM GQLASSVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-241310427129Heat shock factor protein 1
5d5v_B7e-241310427129Heat shock factor protein 1
5d5v_D7e-241310427129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1175890.0BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S8X00.0A0A0C9S8X0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2945_1895 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.24e-78heat shock factor 3