PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10249055g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 28113.8 Da PI: 7.5486 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 16 | 63 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +WTt Ed +l d+++ +G + W++ + g++R++k+c++rw +yl MA_10249055g0010 16 AAWTTKEDMILRDYINIHGLEgGWRSLRDKTGLNRSGKSCRLRWMNYL 63 68*****************8899***********************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 3e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t+E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_10249055g0010 69 RGNISTDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.461 | 10 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-25 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-9 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-10 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.24E-7 | 17 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.654 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRSRRCSRD EGFNRAAWTT KEDMILRDYI NIHGLEGGWR SLRDKTGLNR SGKSCRLRWM 60 NYLRPNIKRG NISTDEEELI IRLHRLLGNR WSLIAGRLPG RTDNEIKNYW NTHLRKKIGA 120 LYKRDQIEAK MTEEDRDVSP GFDLVGANAK KIAVNIETNV NDAQSFDEQS RTLLQEDLTM 180 EICSHPHPNM TSLMLEDEEL IFKQNGITSE GVLGDLHSKF VFDMSFSALD TVESDVAVSC 240 PKPRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-21 | 13 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118608 | 0.0 | BT118608.1 Picea glauca clone GQ04008_C16 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 1e-58 | B8LMJ6_PICSI; Uncharacterized protein | ||||
TrEMBL | F8TJT0 | 2e-59 | F8TJT0_PINRE; MYB-like protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-45 | MYB family protein |