PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10226206g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YB | ||||||||
Protein Properties | Length: 190aa MW: 21140.9 Da PI: 7.7334 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 174.9 | 8e-55 | 35 | 130 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdr+lPianv+rimkk+lP+nakisk+ake++qecvsefisfvt+easdkc++ekrktingdd+lwa++tlGfe y+eplk+yl +yre+e MA_10226206g0010 35 REQDRLLPIANVGRIMKKTLPNNAKISKEAKEIMQECVSEFISFVTGEASDKCHKEKRKTINGDDILWAMTTLGFEVYAEPLKIYLDRYREVE 127 89******************************************************************************************* PP NF-YB 95 gek 97 gek MA_10226206g0010 128 GEK 130 996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.6E-54 | 30 | 146 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.47E-41 | 37 | 145 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-28 | 40 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.4E-20 | 68 | 86 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 71 | 87 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.4E-20 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 1.4E-20 | 106 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGDHSGGESS PHSDIESTGL HKTNNGSSSS QSVIREQDRL LPIANVGRIM KKTLPNNAKI 60 SKEAKEIMQE CVSEFISFVT GEASDKCHKE KRKTINGDDI LWAMTTLGFE VYAEPLKIYL 120 DRYREVEGEK LSLSKQLQAD QPQSEQHPAY NPAHNRPLVM TYKMPLPMPM HAKAPSPTDP 180 AATGHGRRPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-48 | 34 | 125 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-48 | 34 | 125 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ141079 | 1e-128 | FJ141079.1 Pinus taeda isolate 7368 anonymous locus CL4270Contig1_06 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396797.1 | 1e-60 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_024396798.1 | 1e-60 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | Q9FGJ3 | 8e-57 | NFYB2_ARATH; Nuclear transcription factor Y subunit B-2 | ||||
TrEMBL | H9MDE7 | 9e-68 | H9MDE7_PINRA; Uncharacterized protein (Fragment) | ||||
TrEMBL | H9VDK5 | 9e-68 | H9VDK5_PINTA; Uncharacterized protein (Fragment) | ||||
STRING | PP1S83_179V6.2 | 5e-60 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47640.1 | 3e-59 | nuclear factor Y, subunit B2 |
Publications ? help Back to Top | |||
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