PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10226206g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YB
Protein Properties Length: 190aa    MW: 21140.9 Da    PI: 7.7334
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10226206g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.98e-5535130297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       reqdr+lPianv+rimkk+lP+nakisk+ake++qecvsefisfvt+easdkc++ekrktingdd+lwa++tlGfe y+eplk+yl +yre+e
  MA_10226206g0010  35 REQDRLLPIANVGRIMKKTLPNNAKISKEAKEIMQECVSEFISFVTGEASDKCHKEKRKTINGDDILWAMTTLGFEVYAEPLKIYLDRYREVE 127
                       89******************************************************************************************* PP

             NF-YB  95 gek 97 
                       gek
  MA_10226206g0010 128 GEK 130
                       996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-5430146IPR009072Histone-fold
SuperFamilySSF471139.47E-4137145IPR009072Histone-fold
PfamPF008083.2E-2840104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-206886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-2087105No hitNo description
PRINTSPR006151.4E-20106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGDHSGGESS PHSDIESTGL HKTNNGSSSS QSVIREQDRL LPIANVGRIM KKTLPNNAKI  60
SKEAKEIMQE CVSEFISFVT GEASDKCHKE KRKTINGDDI LWAMTTLGFE VYAEPLKIYL  120
DRYREVEGEK LSLSKQLQAD QPQSEQHPAY NPAHNRPLVM TYKMPLPMPM HAKAPSPTDP  180
AATGHGRRPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4834125192Transcription factor HapC (Eurofung)
4g92_B2e-4834125192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1410791e-128FJ141079.1 Pinus taeda isolate 7368 anonymous locus CL4270Contig1_06 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396797.11e-60nuclear transcription factor Y subunit B-3-like
RefseqXP_024396798.11e-60nuclear transcription factor Y subunit B-3-like
SwissprotQ9FGJ38e-57NFYB2_ARATH; Nuclear transcription factor Y subunit B-2
TrEMBLH9MDE79e-68H9MDE7_PINRA; Uncharacterized protein (Fragment)
TrEMBLH9VDK59e-68H9VDK5_PINTA; Uncharacterized protein (Fragment)
STRINGPP1S83_179V6.25e-60(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.13e-59nuclear factor Y, subunit B2
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Xu F, et al.
    DELLA proteins physically interact with CONSTANS to regulate flowering under long days in Arabidopsis.
    FEBS Lett., 2016. 590(4): p. 541-9
    [PMID:26801684]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  4. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]