PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10209922g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 132aa MW: 14899 Da PI: 10.4506 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.3e-17 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+Wv+eIr p++ + r++lg+++t+e+Aa+a++ a +l+g MA_10209922g0010 23 QFKGIRMRK-WGKWVSEIRMPNS---SGRIWLGSYDTPEKAARAYDFAVYCLRG 72 69*****99.**********933...49*********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 22 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-30 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.96E-25 | 23 | 82 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-20 | 23 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.956 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-10 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MIKPSPNQNG HGRSENRSLK SRQFKGIRMR KWGKWVSEIR MPNSSGRIWL GSYDTPEKAA 60 RAYDFAVYCL RGSMAKFNFP YSPPEFPCAS SLSRPQIQAA AAKFAAEEFL LPLEEEAASS 120 STVRLFGSVI RY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-16 | 23 | 81 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102809 | 2e-88 | BT102809.1 Picea glauca clone GQ02016_M05 mRNA sequence. | |||
GenBank | EF677825 | 2e-88 | EF677825.1 Picea sitchensis clone WS02775_L09 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010261769.1 | 2e-39 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q9C591 | 6e-37 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | B8LPP6 | 8e-58 | B8LPP6_PICSI; Uncharacterized protein | ||||
STRING | XP_010261769.1 | 6e-39 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 8e-35 | ERF family protein |