PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_101987g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 444aa MW: 50637 Da PI: 9.7159 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.5e-14 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW eEd ll +vk++G++ W++++++m+ + R +k+c +rw +yl MA_101987g0010 4 RQRWRSEEDSLLHAYVKRYGPREWNLVSQRMNkaLDRDPKSCAERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 27.4 | 8e-09 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ +++E+ l + + +++G++ Wk+Ia+ ++ g t+k + +w y+ MA_101987g0010 59 KGSLSEDEQRLVISLQAKYGNR-WKKIAAQVP-GTTAKRLSKWWEVYR 104 57789*****************.*********.*******99998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.638 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-11 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-19 | 4 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.98E-8 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.6E-13 | 7 | 68 | No hit | No description |
SMART | SM00717 | 2.3E-7 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.35 | 58 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 61 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.19E-5 | 63 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MKERQRWRSE EDSLLHAYVK RYGPREWNLV SQRMNKALDR DPKSCAERWK NYLKPGIKKG 60 SLSEDEQRLV ISLQAKYGNR WKKIAAQVPG TTAKRLSKWW EVYREKQDKV KDRKERIVAD 120 SANTIEEGKY DHILETFAEK YMQNQKQLAT SSSCNLPTIA AMPSGLPPPI SFSMPTNSTP 180 DFIHFAIPSA STPTTCSFGA PIPCLPPWMS NRPNSNSAHG SGTEAFLHSS SLSKSSPSSS 240 SSPSVTLSLS PSSSTPVMSA NTASACSSWM QDTARQSSEN NVSGDSEAAK DKNRGNSHVQ 300 MPSMDPSKSA ASHQAAADQG VIKQEISVFF QHCRELEERQ QSWSMHKKET GWRLKRLEQQ 360 LEAEKARKRR EKMEEIESKV RALREEEHLY LDRLESDYRD QLSRIHRDAE IKEARVMEMW 420 TAKHVQLTKF FEQMVHRHDP HKSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-15 | 7 | 92 | 7 | 89 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-15 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
1msf_C | 8e-15 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 366 | 371 | RKRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112751 | 0.0 | BT112751.1 Picea glauca clone GQ03320_G13 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5096 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 8e-93 | MYB family protein |