PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10192193g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family CO-like
Protein Properties Length: 325aa    MW: 36092.4 Da    PI: 6.6379
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10192193g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.12e-091055342
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      +r C+ + ++++q++C  ++ +lC+ C ++ H        H++v+l
  MA_10192193g0020 10 ARPCDACAQQRAQWYCSADDAHLCNACDTQVHTAntvacrHERVSL 55
                      578*****************************65788888988875 PP
2CCT66.29.2e-23272315144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea ++RY+eKr++R+F KkirY++RK +Ae+RpR+KGrFvk++
  MA_10192193g0020 272 REACVMRYREKRQSRLFYKKIRYHVRKLNAENRPRMKGRFVKRT 315
                       99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338855IPR000315B-box-type zinc finger
SMARTSM003361.0E-5855IPR000315B-box-type zinc finger
PfamPF006431.4E-71155IPR000315B-box-type zinc finger
CDDcd000218.43E-71155No hitNo description
PfamPF062033.7E-17272314IPR010402CCT domain
PROSITE profilePS5101715.338272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATGVGGRAA RPCDACAQQR AQWYCSADDA HLCNACDTQV HTANTVACRH ERVSLSTTTT  60
AVPFPGAPLA CWSSSWLRKR SLSGQRHGRS NPNGERPLGS TPATDAVLED DADKEEEPLS  120
WLWSSDEVDT PLSWLCNHHV KSEASEDVGY VKTELEPEGL LDLNFDFCLV NEREMEKMKV  180
HEESKVHLRL NYEEVVSAWS DRGSPWAQAH PVMNPLDDTI SDLAGDGGSS VFGLVPDLTS  240
LGCGQSGREH VIGQVLVMIH GGDGQRPRAG GREACVMRYR EKRQSRLFYK KIRYHVRKLN  300
AENRPRMKGR FVKRTADASY ESLAL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-26B-box type zinc finger protein with CCT domain