PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_101817g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 27947.5 Da PI: 6.6959 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.5 | 6e-40 | 7 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf +++ +k+fa+vhk+FGasnv+kll+++p er +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+ael MA_101817g0010 7 PCGACKFLRRKCVKGCVFAPYFDSDEgAKNFAAVHKIFGASNVSKLLQHIPIPERCEAVVTISYEAQARLRDPVYGCVAHIFALQQQVASLQAEL 101 7*********************998879******************************************************************* PP DUF260 95 allkeel 101 ++++l MA_101817g0010 102 TFVQAQL 108 *999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.631 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-38 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSGGAPCGA CKFLRRKCVK GCVFAPYFDS DEGAKNFAAV HKIFGASNVS KLLQHIPIPE 60 RCEAVVTISY EAQARLRDPV YGCVAHIFAL QQQVASLQAE LTFVQAQLAS RVASGSASTS 120 MNFPVMSSSS YNQHPHQFPA QISPPCHPIP QPHNALLSRI KEENACGFAN SMDSEFSEPP 180 RDNSSPQMKI LQRCRYREEN GGEDGGDLQA LAHALLLRDS LPYGYDDCQA GDEFEGSSVD 240 GFVKRLWIER GSQFR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-37 | 4 | 128 | 8 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-37 | 4 | 128 | 8 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT122801 | 0.0 | BT122801.1 Picea sitchensis clone WS0461_G07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A9D3 | 1e-157 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | PP1S157_25V6.1 | 2e-56 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-56 | LOB domain-containing protein 20 |