PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10157g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 314aa MW: 33852.1 Da PI: 6.5794

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10157g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.1	8.5e-15	130	176	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ + +Lr+llP+ +K +Ka+ L +++e++k+L MA_10157g0010 130 KSHSEAERRRRERINTHLGTLRSLLPST-----TKTDKASLLAEVIEHLKDL 176 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.685	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-12	130	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-14	131	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-14	131	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-13	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-5	140	179	No hit	No description
CDD	cd04873	1.14E-6	214	282	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-4	214	261	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSGSGSSGDA QFSPWSVPPI QWTSTAGIDQ RMLSCMAPNK EAPSSSYSGF HCGPLQFSYD 60 RLRESGAAVV YGSKSGVGFN GRECGMLQHR QLLANGHGGL FMDGFPAEMA NVAKMTTQEI 120 IDAKALAASK SHSEAERRRR ERINTHLGTL RSLLPSTTKT DKASLLAEVI EHLKDLKRQA 180 LEIAEESAVP TETDELTVDA VPSCGDGKSL VKASVCCDDR PELLSDLIKT LGTLGLCTIK 240 AEITTLGGRV KHELLIDSSN EDNTDYGPPS ISCVHDALKA VMERQNSEGS TTANKRQRLN 300 PFSSIHHIHD GRSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	140	ERRRRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ047436	6e-69	FJ047436.1 Pinus taeda isolate 4627 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047437	6e-69	FJ047437.1 Pinus taeda isolate 4623 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047438	6e-69	FJ047438.1 Pinus taeda isolate 4630 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047439	6e-69	FJ047439.1 Pinus taeda isolate 4637 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047440	6e-69	FJ047440.1 Pinus taeda isolate 4625 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047441	6e-69	FJ047441.1 Pinus taeda isolate 4622 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047442	6e-69	FJ047442.1 Pinus taeda isolate 4626 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047443	6e-69	FJ047443.1 Pinus taeda isolate 4621 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047444	6e-69	FJ047444.1 Pinus taeda isolate 4631 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047445	6e-69	FJ047445.1 Pinus taeda isolate 4636 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047446	6e-69	FJ047446.1 Pinus taeda isolate 4632 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047447	6e-69	FJ047447.1 Pinus taeda isolate 4635 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047448	6e-69	FJ047448.1 Pinus taeda isolate 4633 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047449	6e-69	FJ047449.1 Pinus taeda isolate 4634 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047450	6e-69	FJ047450.1 Pinus taeda isolate 4629 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047451	6e-69	FJ047451.1 Pinus taeda isolate 4624 anonymous locus 0_11790_02 genomic sequence.
GenBank	FJ047452	6e-69	FJ047452.1 Pinus taeda isolate 4620 anonymous locus 0_11790_02 genomic sequence.
GenBank	JQ261741	6e-69	JQ261741.1 Pinus radiata isolate 4638 hypothetical protein (0_11790_02) gene, 3' UTR.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002978655.2	7e-71	transcription factor bHLH30
Swissprot	Q9S7Y1	2e-58	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0C9QX51	1e-129	A0A0C9QX51_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_1935_1396 transcribed RNA sequence
STRING	GSMUA_Achr1P21280_001	1e-68	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]