PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10156436g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 486aa    MW: 53443.9 Da    PI: 5.6762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10156436g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09394434954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  MA_10156436g0010 394 ARQRRERISDRIRILQRLVPGG-----TKMDTASMLDEAVNYLKFL 434
                       69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-12391439No hitNo description
SuperFamilySSF474597.46E-14391445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-12391443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6394434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLPAVSKPPS WGSVTLISSQ VPASLSIPMV CAPEVPSKNI DLIANLHTVI MGFQQQRNIV  60
TQSPKGSSHT QAITDCHPTQ LKQMVETTIP ELDSLNSEDG LRFLQRHEGF RFVEDSVPVR  120
YGPAAGWDHG LSTEVLASAQ NIFVAESEID QNDLNTAYNN IAILQSSPSL PFTYGYENHL  180
PSDPDLPSLP TDSIESLDCL FSVTNSSSYN VDNIMENDDG MSPTTTEHDN NGNVKTKMLS  240
TSISTDFPPL LCRTLSSAAS SESQTHNLAP EPEDQSVSQG SSDPIKGKES KALKMSSQVG  300
SNNYKRPRDS SSVPKRSKSK NKTLIKDEPG QQYSFVFGQA DSSEVEPDVE AIATMREMIY  360
RAAAFRPVNL GMEILEKPKR KNVRISSDPQ TVAARQRRER ISDRIRILQR LVPGGTKMDT  420
ASMLDEAVNY LKFLKAQVKA LESLGNKVDK MQINSTMPAC FTSSSNALNS YSFDVFNSHI  480
YQNRLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394399RQRRER
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-47bHLH family protein