PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10100585g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 228aa    MW: 25741 Da    PI: 8.6195
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10100585g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.49.8e-33181102103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +++n+fvv+ ++ef+  vLp yF h+nf+SFvRQLn+YgF+k+ + +          eF+++ F+kg+++ll
  MA_10100585g0010  18 FLVKTYRLVDDPSTDHIVSWGDHKNTFVVWRPKEFSACVLPCYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANDLFRKGQTHLL 101
                       9***************************************************************9988.........67************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k +
  MA_10100585g0010 102 SHIQRRKPS 110
                       ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.7E-5014107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.98E-3316107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.2E-3616107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.9E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGMDGSVRDA GRLVASPFLV KTYRLVDDPS TDHIVSWGDH KNTFVVWRPK EFSACVLPCY  60
FNHTNFSSFV RQLNTYGFRK IVRGRCEFAN DLFRKGQTHL LSHIQRRKPS STSTTQASQI  120
EYEKSSSSLI PYSLSTVQDS DVPAAAPSLS EENEILRRNN SLLLSEIARL QNICSRDLTL  180
FSRQNTRNPP SIDMDRSKVD NASPTSSMTE VAEEINMTPP KLFGVPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-201810729129Heat shock factor protein 1
5d5v_B1e-201810729129Heat shock factor protein 1
5d5v_D1e-201810729129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1119110.0BT111911.1 Picea glauca clone GQ03307_F23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891331.11e-52heat stress transcription factor B-4
TrEMBLH9WK889e-84H9WK88_PINTA; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr9P15370_0017e-53(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-52heat shock transcription factor B4