PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_100577g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22586.2 Da PI: 5.1237 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.2e-16 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+W +eIr p++ r++++lg++ tae+Aa+a++aa +l+g MA_100577g0010 19 QFKGIRMRK-WGSWGSEIRTPKT---RAKIWLGSYKTAEQAARAYDAAVYCLRG 68 69*****99.**********965...4*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.1E-31 | 19 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-18 | 19 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.232 | 19 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-26 | 19 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 19 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-9 | 20 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEKAPEELAH RACGQERHQF KGIRMRKWGS WGSEIRTPKT RAKIWLGSYK TAEQAARAYD 60 AAVYCLRGPN AKLNFPDSVP AIPSAFCLSR RQIQLVAARY ARDELPSSST SNSLSSQNSN 120 NKASDEPECP LRSSLVSETV LSSDTSQQIS EGRDMALWES QFHGMNLETL PPIAEALGLD 180 PIPTWQEEEE QDGYLWNLWE V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-16 | 11 | 76 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087331 | 0.0 | EF087331.1 Picea sitchensis clone WS02745_A05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ADJ9 | 9e-59 | D5ADJ9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 6e-33 | ERF family protein |