PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10020434g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26312.3 Da PI: 6.0164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+Wv+eIr p + +r++lg++ tae Aa+a++aa ++l+g MA_10020434g0010 46 QYRGVRMRR-WGSWVSEIRAP-----HqkTRIWLGSYTTAEAAARAYDAALLCLKG 95 69****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-30 | 45 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-19 | 46 | 105 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-10 | 46 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.29E-18 | 46 | 105 | No hit | No description |
SMART | SM00380 | 7.8E-32 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 46 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVCRSKESEC RQNVLIGSQQ HPERRECQVS SKAGKKSSRG SGQPRQYRGV RMRRWGSWVS 60 EIRAPHQKTR IWLGSYTTAE AAARAYDAAL LCLKGSSAAF NFPESATIIQ LPQSCQPPLM 120 SPRSIQKVAA AAAYGSPSAA TDLAGSNGVH CGAHNLQDSI LKTEIGAETM VNTTNNNDDA 180 DLTQEISWLE SPSRVDYAYD HQMLCCALLS SDLTPLSDWV DESYGQDDYE DLSNLWNFT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 53 | RQYRGVRMRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ118849 | 1e-100 | FJ118849.1 Pinus taeda isolate 5484 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118850 | 1e-100 | FJ118850.1 Pinus taeda isolate 5492 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118851 | 1e-100 | FJ118851.1 Pinus taeda isolate 5488 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118852 | 1e-100 | FJ118852.1 Pinus taeda isolate 5490 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118853 | 1e-100 | FJ118853.1 Pinus taeda isolate 5477 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118854 | 1e-100 | FJ118854.1 Pinus taeda isolate 5485 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118855 | 1e-100 | FJ118855.1 Pinus taeda isolate 5493 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118857 | 1e-100 | FJ118857.1 Pinus taeda isolate 5483 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118860 | 1e-100 | FJ118860.1 Pinus taeda isolate 5481 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118861 | 1e-100 | FJ118861.1 Pinus taeda isolate 5482 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118862 | 1e-100 | FJ118862.1 Pinus taeda isolate 5487 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118863 | 1e-100 | FJ118863.1 Pinus taeda isolate 5489 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118865 | 1e-100 | FJ118865.1 Pinus taeda isolate 5479 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | JQ264408 | 1e-100 | JQ264408.1 Pinus radiata isolate 5494 hypothetical protein (UMN_971_01) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B2CSN5 | 6e-36 | B2CSN5_TAXCU; Transcription factor AP2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-25 | ERF family protein |