PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_28398A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 99aa MW: 11244.7 Da PI: 9.5535 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 81.7 | 6.9e-26 | 27 | 97 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kv tpsdv+k++rlv+pk++ae+ +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F Oropetium_20150105_28398A 27 FDKVVTPSDVGKLNRLVIPKQHAES------------FEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFG 97 89*********************54............5799****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-28 | 22 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-26 | 24 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.39E-22 | 25 | 96 | No hit | No description |
Pfam | PF02362 | 4.3E-22 | 27 | 97 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-9 | 27 | 99 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.716 | 52 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MEFAAAGPIR SGGDVDDAVV VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE SFEDRTGKPW 60 RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-41 | 20 | 98 | 1 | 95 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-41 | 20 | 98 | 1 | 95 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_28398A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366601 | 7e-69 | AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678485.1 | 6e-52 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q8LMR9 | 2e-49 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A3L6TKR2 | 3e-53 | A0A3L6TKR2_PANMI; B3 domain-containing protein | ||||
STRING | Si036864m | 2e-51 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 4e-44 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_28398A |
Publications ? help Back to Top | |||
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