PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_28324A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 21480 Da PI: 9.2462 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 59.2 | 7.7e-19 | 69 | 128 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnh 58 Dg+ WrKYGqK++k++e+pr YYrC+++ +C + +++++++ p + ++tY+ eH++ Oropetium_20150105_28324A 69 DGHLWRKYGQKKIKDAEYPRLYYRCSYRddrNCLASMLLQQQNSEvPPLYHVTYTYEHTC 128 9**************************99999*****9998876637899********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-19 | 57 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-18 | 60 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-27 | 67 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.698 | 69 | 131 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-20 | 69 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASPRMKSEQ SFDFGDSSIQ DAMGSASESY SPPGTRFGLS PLDSSPPDGR RRRRDRPTWS 60 QYTYTPYLDG HLWRKYGQKK IKDAEYPRLY YRCSYRDDRN CLASMLLQQQ NSEVPPLYHV 120 TYTYEHTCGA PPIRMPDIDV VVEQHQPPAA RMEGLVLRFD SPSAATTMKR GSSTMQPSRL 180 QQTRTQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_28324A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456547.1 | 1e-73 | probable WRKY transcription factor 30 | ||||
TrEMBL | C5XNA0 | 3e-72 | C5XNA0_SORBI; Uncharacterized protein | ||||
STRING | Sb03g038180.1 | 4e-73 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11529 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01900.1 | 7e-17 | WRKY DNA-binding protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_28324A |