PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_28312A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 329aa MW: 37439 Da PI: 9.7984

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_28312A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.3	2.1e-25	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l +++k+F+lpi++A+k+L++++++LK++CR+yGI+RWPhRkiksl Oropetium_20150105_28312A 203 ESITLVEIAKCFHLPIREASKTLKIGVSILKKKCREYGIPRWPHRKIKSL 252 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.939	187	273	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-20	204	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDAAVSTLTA LAIFESTVER GVVRSVHGYR VVGRKAGVGW VRWERWVERG FVLSADGSRE 60 VGVPPDAPRI LQAGWRSRPA FREGQTVGDW RCIVAFDSVA AVKPXXXXXX XXXXTGNPQL 120 KCLPNLYNDL EKVFQFQSVE NLPQLIHSDS EEQQQSIHSG ERDNISDETD YASGCYSDED 180 PQSGSELVPP VQRYRRAKRG HIESITLVEI AKCFHLPIRE ASKTLKIGVS ILKKKCREYG 240 IPRWPHRKIK SLDSLIHDVE SVLGDQARDD VEQKKYAFAI GALTKRKRML EREKENIRQK 300 PASDLLTETK QFREDVFKRR NRARRGRD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_28312A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976506.1	1e-140	protein RKD5
TrEMBL	A0A368RXP8	1e-139	A0A368RXP8_SETIT; Uncharacterized protein
STRING	Pavir.Ga01021.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-47	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_28312A