PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_28222A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21011 Da PI: 8.3743 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Oropetium_20150105_28222A 41 FECKTCSRQFPTFQALGGHRASH 63 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00089 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L H+r+H Oropetium_20150105_28222A 104 HECPVCGLEFAVGQALGGHMRRH 126 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.44E-8 | 39 | 63 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.44E-8 | 99 | 126 | No hit | No description |
Pfam | PF13912 | 2.9E-10 | 103 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.452 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSKRDRPAAW EEETARVLLL TSSRGGGEGN NNNNNSGRRV FECKTCSRQF PTFQALGGHR 60 ASHKRPRLLH QPAVEHAELC LGLGQRQPLL LPPPQQPANK PRVHECPVCG LEFAVGQALG 120 GHMRRHRAAE ADEAQAPITT TKACCDVDVG VCLDLNLTPS ENCAQCRNVL LVRGGGVAAQ 180 QGAVHKALAM LDCSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_28222A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ244241 | 1e-35 | DQ244241.1 Zea mays clone 3770 mRNA sequence. | |||
GenBank | EU970219 | 1e-35 | EU970219.1 Zea mays clone 342364 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970514.1 | 1e-58 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A3L6SKA7 | 4e-62 | A0A3L6SKA7_PANMI; Zinc finger protein ZAT12 | ||||
STRING | Pavir.J34723.1.p | 4e-67 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-28 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_28222A |