PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28016A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 486aa    MW: 52271.4 Da    PI: 8.8482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28016AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.5e-32225281259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Oropetium_20150105_28016A 225 DDGYNWRKYGQKVVKGSECPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 281
                                8**************************************99.***************8 PP
2WRKY1084.5e-34381439159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Oropetium_20150105_28016A 381 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 439
                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-29221283IPR003657WRKY domain
SuperFamilySSF1182901.57E-25223283IPR003657WRKY domain
SMARTSM007742.7E-35224282IPR003657WRKY domain
PROSITE profilePS5081123.307225283IPR003657WRKY domain
PfamPF031069.5E-25225281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-37367441IPR003657WRKY domain
SuperFamilySSF1182902.75E-29373441IPR003657WRKY domain
PROSITE profilePS5081137.413376441IPR003657WRKY domain
SMARTSM007747.0E-40381440IPR003657WRKY domain
PfamPF031063.9E-26382439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
GSQTVNRPTV LSDHRRRRRR RLPYGDGESL FTGAGDASPG PLTLASTLFP SDGQGAASSS  60
GAGPTSFTQL LIGNIAPQQQ QRHGAERGVA RAGPALSVAP PASSGSGASV FTVPPGLSPS  120
GLLDSPGLLF SPAMGGFGMS HQQVLAQVTA QASHSPLKMF DNMEQQSFSA AAPSSEAQQH  180
MNSAANMAGT SEMRTATANN DNSSFQSAEA SQRYQVNAPV DKPADDGYNW RKYGQKVVKG  240
SECPRSYYKC THPNCPVKKK VEHAEDGQIS EIIYKGKHNH QRPPNKRAKD GNPSAAEQIE  300
QSNDTTSVLS GAKRDQEAIY GISEQLSGFS DGDDMDDGQS RPHEVDDGDS ENKRRNIQIS  360
SQRTLSEPKI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPH PRSYYKCTFA GCNVRKHIER  420
ASSDPKAVIT TYEGKHNHEP PVGRGNQNAG ISQQKGQNNG ASLSRTDFSN ANQGPMGFLQ  480
FKREE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-39215441877Probable WRKY transcription factor 4
2lex_A8e-39215441877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420RRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28016A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLB6SYC50.0B6SYC5_MAIZE; SPF1-like DNA-binding protein
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-99WRKY DNA-binding protein 3