PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27983A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 261aa    MW: 29302.6 Da    PI: 7.7681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27983AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.82.5e-2936126187
                                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v
  Oropetium_20150105_27983A  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEVGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVV 119
                                99***************************9666668889********************************************* PP

                                EEEE-SS CS
                         B3  81 vFkldgr 87 
                                 F++++ 
  Oropetium_20150105_27983A 120 HFERMRG 126
                                ***7754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-4031145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-2933140IPR015300DNA-binding pseudobarrel domain
CDDcd100175.09E-2834126No hitNo description
PfamPF023628.8E-2736139IPR003340B3 DNA binding domain
PROSITE profilePS5086313.50736140IPR003340B3 DNA binding domain
SMARTSM010193.2E-2236141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAMNHLSQEY PQAWPWGVAM YSNLHFHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLSGDSGE KGLILSFEDE VGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KHLDAGDVVH  120
FERMRGLGIG DRLFIGFRRR GESATAAVSP LPAVRVVATG QSAGEQQPWS PMCYSTSGSY  180
PNSPANSCAY RHSVDHDHSN TPRTGESSAA SVPSRRLRLF GVNLDCGPEP EAETATGMYG  240
YMHQSSYAST FPEPNNWSSP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-51311403113B3 domain-containing transcription factor NGA1
5os9_B1e-51311403113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27983A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827830.11e-142B3 domain-containing protein Os11g0156000-like isoform X2
SwissprotQ53QI01e-124Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A3L6PJV11e-142A0A3L6PJV1_PANMI; Uncharacterized protein
STRINGPavir.Ha01761.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.12e-62B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]