PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_27950A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 354aa MW: 39330.6 Da PI: 8.0376

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_27950A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.9	6.4e-09	49	136	37	127
NAM 37 vdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgk.rk.nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116 +d+y+++P L +++++ + + wyf + ++ k+ +++ + +r+ g W+ g++k+v + gl + L f ra+ + Oropetium_20150105_27950A 49 ADVYSADPDALTRRFRQwGYRgVWYFLCVARWKAGNKRkKFsRRVEGGGAWRGIGTSKPVGR------GLGQRLGFE-YRAKWS 125 69*******96555533344899999999888864413315588899*******88......566667774.578888 PP NAM 117 ektdWvmheyr 127 kt W+m+e + Oropetium_20150105_27950A 126 AKTVWIMEEIS 136 9*****976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.302	1	157	IPR003441	NAC domain
SuperFamily	SSF101941	9.42E-12	45	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQELMPALRP SVPAGXXXXX XXXXXXXXXX XXXXXXXXXX XXXGLVCLAD VYSADPDALT 60 RRFRQWGYRG VWYFLCVARW KAGNKRKKFS RRVEGGGAWR GIGTSKPVGR GLGQRLGFEY 120 RAKWSAKTVW IMEEISTSLA AAADGVGVKV VCKVYHPRKK DSSAAVAAAD PDEEEETNEI 180 GCKRPASDEY DEEAVRKRAK MDGLDECPVS VAPPSAXXXX XXXXXXXXXX XXXXXXXVAA 240 GCTGECGSXX XXXXXXXXXX XXXXXXXXXR RRAKALXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX SVPTDDADAV EGGDQIGNHH SPDGDAPAAD VELRRIFTET LIR*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQELMPALRP SVPAGXXXXX XXXXXXXXXX XXXXXXXXXX XXXGLVCLAD VYSADPDALT  60
RRFRQWGYRG VWYFLCVARW KAGNKRKKFS RRVEGGGAWR GIGTSKPVGR GLGQRLGFEY  120
RAKWSAKTVW IMEEISTSLA AAADGVGVKV VCKVYHPRKK DSSAAVAAAD PDEEEETNEI  180
GCKRPASDEY DEEAVRKRAK MDGLDECPVS VAPPSAXXXX XXXXXXXXXX XXXXXXXVAA  240
GCTGECGSXX XXXXXXXXXX XXXXXXXXXR RRAKALXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX SVPTDDADAV EGGDQIGNHH SPDGDAPAAD VELRRIFTET LIR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_27950A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11474	18	34

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_27950A