PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_27917A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 130aa MW: 14242.8 Da PI: 11.1561 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.6 | 3.8e-13 | 18 | 119 | 5 | 98 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknr..at 78 f+ hP+d elv yL++ v++ + ++++ +++ + P + ++ +e+ wyf ++ ++k+++gkrk r at Oropetium_20150105_27917A 18 FHSHPSDLELVESYLRPWVDSASRPAASStFPTSTPPDPPP----SpgtsrpaDAQDGERAWYFLTPLRRKSERGKRKVRtvAT 97 6679*****************99777332244433333333....233445556777899********************7668 PP NAM 79 ksgyWkatgkdkevlsk..kge 98 +g W++ k+k+v+++ +++ Oropetium_20150105_27917A 98 GEGWWHNEAKSKPVIDAldGRR 119 89************98655444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.896 | 14 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-9 | 18 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-13 | 18 | 123 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MGRSPSPPAN DRPPRAPFHS HPSDLELVES YLRPWVDSAS RPAASSTFPT STPPDPPPSP 60 GTSRPADAQD GERAWYFLTP LRRKSERGKR KVRTVATGEG WWHNEAKSKP VIDALDGRRH 120 VGTARPSRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_27917A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817187.1 | 7e-37 | protein ATAF2-like | ||||
TrEMBL | A0A2S3HSV7 | 2e-35 | A0A2S3HSV7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DII9 | 2e-35 | A0A2T7DII9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J36802.1.p | 2e-35 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_27917A |