PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_27869A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 547aa MW: 56409.7 Da PI: 7.3766 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 46.1 | 1.8e-14 | 196 | 272 | 6 | 82 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaes 77 + + k++T++g+RdRRvRlsa++a++f+d +++WL+++ak ai++l + + ++s++ a+s Oropetium_20150105_27869A 196 TGTGKVCTARGPRDRRVRLSAHTAIQFYD------------AVDWLIKNAKDAIDKLEVLpawqptatnaaAAAPSSSThPADS 267 5689*************************............9******************665555444331111122221111 PP TCP 78 ssssa 82 ++s+ Oropetium_20150105_27869A 268 AENSD 272 11111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-9 | 200 | 272 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MGSGRWMDAH CGGWTTTSSS GGRADGGIWI RGAITAVEAT AQAAAAEEEE RSKKQMSSIT 60 TTTTCCRSTT EQQPVFQLQH LQAAAAVRQQ QQRGLSVSSA EYALLAPMGD AGHHHHGFQP 120 QLLSFAQHPL HQFTAQATAT GTASHSRSRA AAAATEGGAS GEVVPATSHS RVRSTGGRDR 180 GRAGRAHCAV DGAPRTGTGK VCTARGPRDR RVRLSAHTAI QFYDAVDWLI KNAKDAIDKL 240 EVLPAWQPTA TNAAAAAPSS STHPADSAEN SDDQAQAITV AHAGFDFPGG AAGGSSSGGG 300 AGFLPASLDS DSIADTIKSF FPMGGTGGGE ASSSAAAAHS SAMGFQNYTP DLLSRTGSHS 360 QELRLSLQPL PDPMFQHQQE HDRSHGHGGN GSAQQHQALF PGAAGYTFGG GTMRRRAQRM 420 VPWNMPDPGG GGGYLFNVSQ QAAHMQAALG GQSQFLFQRG PLQSSNQPSD RGGWPETTVE 480 PDNPMHHHHQ AAGLGSAVSA VGFGPGIGGF SGFRIPGRIQ GEEEHNGGGG NGDKPPPSSV 540 SSASHH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_27869A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310872.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_021310873.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | A2WM14 | 1e-134 | PCF5_ORYSI; Transcription factor PCF5 | ||||
TrEMBL | A0A3L6R0N0 | 0.0 | A0A3L6R0N0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J03475.1.p | 0.0 | (Panicum virgatum) | ||||
STRING | Sb03g001940.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 9e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_27869A |