PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27822A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SRS
Protein Properties Length: 458aa    MW: 47516.5 Da    PI: 9.2906
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27822AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702191.82.3e-592083754154
                     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasa..aeaaskrkrelkskkqs 84 
                                gt+sC dCGnqakk+Cah+RCRtCC+srgf+C thvkstWvpaa+rrer qqqla a ++       ++ +   + +++++   
  Oropetium_20150105_27822A 208 GTTSCYDCGNQAKKGCAHSRCRTCCNSRGFECDTHVKSTWVPAARRRERhQQQLAGAGASPPPPYlaKKPRLACQTNNNNTGGG 291
                                789**********************************************55566655554444333222222333333456677 PP

                     DUF702  85 alsstklssaeskkeletss..............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                + s+t++s+a++++++etss              lP++v+ +avfrcv+++svddg+ e+aYq+av+i+Gh+f+G+Lyd G+e+
  Oropetium_20150105_27822A 292 TNSRTSTSNATTPRSFETSSshhhnhqdasfresLPRHVRGPAVFRCVQMTSVDDGHREVAYQAAVTINGHLFRGLLYDLGAED 375
                                8888999999999999999889999999*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-52209374IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-24211253IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.9E-21326372IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MYFPAQLSGD PVYFRLLRER ATVASSSGRR FATDSTAVAD WRPSPAGGGG RGGDLSLGFN  60
AGASSSLAAE LWAVGSVASR QAAAAAAALG HGAVNAAGDV GMVVVAPSSG RASSFHHHHH  120
HQQQQQRASP AHDPMFPLVA AAHRALETTT NANANAKPAS APGPTIHFWQ QAAADGASPP  180
SPSPGKKPRG GGGGGGRADS GGSGSIGGTT SCYDCGNQAK KGCAHSRCRT CCNSRGFECD  240
THVKSTWVPA ARRRERHQQQ LAGAGASPPP PYLAKKPRLA CQTNNNNTGG GTNSRTSTSN  300
ATTPRSFETS SSHHHNHQDA SFRESLPRHV RGPAVFRCVQ MTSVDDGHRE VAYQAAVTIN  360
GHLFRGLLYD LGAEDEGRAA HLGSSDLHLG SASAAAAPDL YNSGGGGPLI LGGLGYVHAV  420
VLRFWEHGYC SRGLVYLVHW RTAGVTLDQI PMQDIIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188196RGGGGGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27822A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390923e-47BT039092.1 Zea mays full-length cDNA clone ZM_BFb0370H22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806754.11e-110protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A3L6SZ111e-105A0A3L6SZ11_PANMI; Protein LATERAL ROOT PRIMORDIUM 1-like
STRINGPavir.Cb01442.1.p7e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.29e-44Lateral root primordium (LRP) protein-related