PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_27801A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 366aa MW: 39389.9 Da PI: 8.3848 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.8 | 3.5e-21 | 185 | 243 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrC ++r+a+d +v++ tY g Hnh+ Oropetium_20150105_27801A 185 NDGCQWRKYGQKVAKGNPCPRAYYRCXXXxXXXXXXXLQRCAHDASVLVSTYDGAHNHP 243 8**************************9978888999*********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-22 | 172 | 243 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-18 | 177 | 244 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.446 | 179 | 245 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-20 | 184 | 244 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-16 | 185 | 243 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MQKREKKSTR SSSSLLMELN NRTRVLFEEV MRDDEADKLQ QRNYYPGLQV LGIDGEEAAA 60 AGRRGTGNEP PEPFLSLSLG TASAIPERGE ETSSPIGLGL ALGLRRSSFL GFGETDNGGS 120 PVVGAKRHRR TTSDDSGNGG AEDPEDAVAR RGRGKXXXXX XXXXXPPARP GRVSFRTRCS 180 AATLNDGCQW RKYGQKVAKG NPCPRAYYRC XXXXXXXXXX XLQRCAHDAS VLVSTYDGAH 240 NHPLTPYAXX XXXXXXXXXX XGSXXXXXXX XXXXXSLRPE ATTDDAPPLL AMPVAMLPPQ 300 SYAAAGSTAA APLSHQNPMM ANFLEKAVAD PKFRAAVMAA VASYVCEQCG GGTIGDLLAT 360 FPPPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-14 | 172 | 246 | 2 | 75 | WRKY transcription factor 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_27801A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14319 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 1e-30 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_27801A |