PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27741A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 518aa    MW: 59134.6 Da    PI: 7.1193
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27741AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS63.34.9e-202503471101
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL++cA+av+++d +la  l+ ++++++s dgd +qRla+y++ +L+arl + +s+ y +l +++ s    +++++a++lf
  Oropetium_20150105_27741A 250 LRSLLIHCAQAVAASDRQLAGDLIRKIRQHSSADGDCNQRLAFYLVDGLEARLDGIGSKAYYKLMAKRVS---DENVIKAYNLF 330
                                689****************************************************999999988888887...6889999**** PP

                       GRAS  85 sevsPilkfshltaNqa 101
                                   +P+++ s+  +Nq+
  Oropetium_20150105_27741A 331 LASCPFYRTSYTFTNQT 347
                                ***************96 PP
2GRAS145.74.7e-45348514125291
                       GRAS 125 WpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                                Wp+L+q++a+  e +p+lRiTg++ p++g    e +ee g+rLa++A+ ++vpfe++  +++r+e++++e+L+++++E+l++n+
  Oropetium_20150105_27741A 348 WPSLIQQFAEL-EAQPKLRITGIDMPRPGfePLEIIEEAGKRLADYAKMFNVPFEYQG-ISSRFEAIQIEDLNIEEDEVLIINC 429
                                *********96.778*************9999999***********************.7************************ PP

                       GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                                ++++++l de+ +++s+rd+vLk++++++P+++++   + +++s+ Fl+rf e + +ys+lfd+l+a++pr++e r+++Er l+
  Oropetium_20150105_27741A 430 MYRMKNLGDETIAMNSARDRVLKMMRRMNPQILILGIVNGSYSSPFFLTRFKEVMFHYSSLFDMLDANVPRDDEVRKMLERGLF 513
                                *********************************************************************************998 PP

                       GRAS 291 g 291
                                +
  Oropetium_20150105_27741A 514 A 514
                                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.401224517IPR005202Transcription factor GRAS
PfamPF035141.7E-17250347IPR005202Transcription factor GRAS
PfamPF035141.6E-42348514IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MSNPQFFPPP TNVLPNTQLS GVVPIPGLHN LSNNVRQNRL QNAEPVISPD YQRIRSNDAL  60
HYISQMLMED VDDRVDLHQG EDVLQAAEKQ FYDILAQPLT NTSRLGFPAL HLTRGVEEEG  120
KGYDKLVIYL DDNMLSICRL TTKAKVGERN RFEIFGVTNH RKHPYIRDDL SALGVRSSAI  180
TSCEIPRHEK FDIVLICYDD RESFTETINL RKAMTRVNNS SIGQGKVHSQ CQQKLQSKTK  240
RLNSKEVVDL RSLLIHCAQA VAASDRQLAG DLIRKIRQHS SADGDCNQRL AFYLVDGLEA  300
RLDGIGSKAY YKLMAKRVSD ENVIKAYNLF LASCPFYRTS YTFTNQTWPS LIQQFAELEA  360
QPKLRITGID MPRPGFEPLE IIEEAGKRLA DYAKMFNVPF EYQGISSRFE AIQIEDLNIE  420
EDEVLIINCM YRMKNLGDET IAMNSARDRV LKMMRRMNPQ ILILGIVNGS YSSPFFLTRF  480
KEVMFHYSSL FDMLDANVPR DDEVRKMLER GLFAAMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-272545138288GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27741A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680797.10.0scarecrow-like protein 9
SwissprotO809336e-99SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D9WBY21e-173A0A0D9WBY2_9ORYZ; Uncharacterized protein
TrEMBLA0A3B5YS291e-175A0A3B5YS29_WHEAT; Uncharacterized protein
STRINGPavir.Ca00617.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-101GRAS family protein