PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27740A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 576aa    MW: 66033.6 Da    PI: 7.0334
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27740AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.84.8e-1042075732374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                + lL++cA+a++s++   a++lL+++++++sp+gd +        + L+arla+++s++yk+l ++++s   + + l+a+++f 
  Oropetium_20150105_27740A 207 QALLIQCAQAIASNNYPYASELLKTIRNHSSPYGDGTPED----GNSLEARLAGTGSQIYKTLMAKRAS---VRDMLKAYHFFI 283
                                679*******************************998764....689****************999999...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                 ++P++k+++   N++I++ +eg   vHiiDf+i+ G+QWp+L+q La+R++gpp+lRiTg++ p++g   ++++ e g+rLa+
  Oropetium_20150105_27740A 284 AACPFVKVAYYFSNKTIVNVLEGRPIVHIIDFGIMFGFQWPSLIQRLAKREGGPPKLRITGIDVPDPGlhPRKTIDEAGKRLAE 367
                                ******************************************************************99999************* PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +Ae ++vpfe++  +a+r+e++++e+++++++E+l++n+ +++++l de+ +++s+rd+vL  +k+++P+v+++   + +++s+
  Oropetium_20150105_27740A 368 YAEMFNVPFEYHG-IASRWENIRVEDISINKDEVLIINCLHHIENLSDETEDMDSARDRVLCNMKRMNPEVLILGIVNGSYSSP 450
                                *************.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 Fl rf e l y+s+lfd+l+++++r +e+r+ vE++llg ++ nvva egaer+e+ e++++Wr r ++aGFk++p+++ + k
  Oropetium_20150105_27740A 451 FFLPRFRELLFYFSSLFDMLNTTVARSHEARVLVEKHLLGSNVLNVVAFEGAERIEKPESYKQWRIRSHKAGFKQLPVNQAILK 534
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                      ++ + + + + e+sg+l++gWk+r +++vS+W+
  Oropetium_20150105_27740A 535 RSTEKKEELYHEDFVISEDSGWLLQGWKGRIMYAVSSWK 573
                                **********899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.749180553IPR005202Transcription factor GRAS
PfamPF035141.7E-101207573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MKTLLLTKDS GWLLQGWKGR VIHAISKWKP NTSASSEAMD SHESCEINSN ITLDYINLLM  60
EEHTDEKIST YHQYDALEAM EKPFYDILGQ TGAEEAKKLV PSIEKLVFDL ESNDLLLPCE  120
RLRIRSHPNV DSEFLQGRRN KHLAVSTCEK IRDETFDCVL LCHGQLYRDI AHLKEIKVRE  180
LYKCRQNVRN KGYDQGLDKR QESVDLQALL IQCAQAIASN NYPYASELLK TIRNHSSPYG  240
DGTPEDGNSL EARLAGTGSQ IYKTLMAKRA SVRDMLKAYH FFIAACPFVK VAYYFSNKTI  300
VNVLEGRPIV HIIDFGIMFG FQWPSLIQRL AKREGGPPKL RITGIDVPDP GLHPRKTIDE  360
AGKRLAEYAE MFNVPFEYHG IASRWENIRV EDISINKDEV LIINCLHHIE NLSDETEDMD  420
SARDRVLCNM KRMNPEVLIL GIVNGSYSSP FFLPRFRELL FYFSSLFDML NTTVARSHEA  480
RVLVEKHLLG SNVLNVVAFE GAERIEKPES YKQWRIRSHK AGFKQLPVNQ AILKRSTEKK  540
EELYHEDFVI SEDSGWLLQG WKGRIMYAVS SWKPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4921257425380Protein SCARECROW
5b3h_A3e-4921257424379Protein SCARECROW
5b3h_D3e-4921257424379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27740A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440450.20.0scarecrow-like protein 9
SwissprotO809331e-140SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1B6P5S10.0A0A1B6P5S1_SORBI; Uncharacterized protein
STRINGSb09g001140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-122GRAS family protein