PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_26960A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 452aa MW: 47118.1 Da PI: 8.3379 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.6 | 1.9e-33 | 62 | 189 | 2 | 111 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a ai++l+++ Oropetium_20150105_26960A 62 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLevaaagfpshpasaaaaaga 145 689*************************************************************87777665555444444444 PP TCP 66 ......ssssaseceaesssssasnsssg.............kaaksaakskksqksaasalnla 111 + +++ + +s+ s++s+ s+l+l+ Oropetium_20150105_26960A 146 gankgtA---------------------TpppaedadddedqGNQQRSGCSSTSETSKGSVLSLS 189 4433321.....................0222222222222212222223333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-34 | 63 | 191 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.856 | 64 | 122 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MESCGGGGGV VEGRKRGRVK SAGEEPEAKR RMPAATLAPW AAAAQPQPQH PASRIYRVSR 60 ASGGKDRHSK VYTAKGIRDR RVRLSVATAI QFYDLQDRLG YDQPSKAIEW LIKAAADAID 120 KLPSLEVAAA GFPSHPASAA AAAGAGANKG TATPPPAEDA DDDEDQGNQQ RSGCSSTSET 180 SKGSVLSLSR SEXXXXXXXX XXXXXAAARD KDPADDRRAP PAATTSSFTE LLTGMATAAA 240 TAAAPSPVVA EHKQQQQSSI SWTPMAVSAT TADYIGFAQP RKAGHAMAHS HLASPAPHLG 300 SSIGVTPAQQ HFGLPAGAVT VASGGGEPPH AEMTQFSFLQ DHFMPVHAAP PPASGAAGEY 360 NLNFSMSSGL VGVNGRGTLQ SNSHISGHHH HQHHHHQQQL QRLSAPLDAP NIPFLFSPAA 420 AAAPTAADTQ FAAFQLWNGI HHADIKEKGK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-27 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-27 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 30 | RKRGRVKSAGEEPEAKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_26960A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066930 | 3e-87 | BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396804.1 | 1e-170 | transcription factor PCF6 | ||||
TrEMBL | A0A0A9FN09 | 1e-169 | A0A0A9FN09_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ba03864.1.p | 1e-155 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-37 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_26960A |