PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26714A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 311aa    MW: 34051.8 Da    PI: 7.531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26714AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000186385123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C + F++   L  H+++H
  Oropetium_20150105_26714A 63 YSCSFCQREFRSAQALGGHMNVH 85
                               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-66090No hitNo description
SMARTSM003550.00496385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2616390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEQIGKYWGV WGSTMRRGNT TSPIPSWSAA ASPYSSEPSW EEQAFARDAA AHLGGCVWPP  60
RSYSCSFCQR EFRSAQALGG HMNVHRRDRA LLRQGSSLDD SQDEAPLVEH PGGGAFFCRP  120
TSNPSAMSSS IAVVTAAQGE VNHGTSSAPP SYLTSIIKES KNKVYMSIPA STTIRVEEAK  180
DQCDHDDDVE SGRMNKRRRL DHPPSITLQI FSVQTTTPSI AAKSELQGVD HDAKVLKAII  240
SNPSSVLNLV DQQDVDLELR LGRTPKTSGQ RHEEQTSSKV RGQGEGARRL DRAANDESCC  300
WVENWARRKL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125885229superman protein
2l1o_A1e-125885229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26714A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387161e-51BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds.
GenBankEU9721091e-51EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds.
GenBankHQ8587121e-51HQ858712.1 Zea mays clone UT1168 C2H2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828169.13e-86uncharacterized protein LOC112903166
TrEMBLA0A0A9VPW51e-113A0A0A9VPW5_ARUDO; Uncharacterized protein
STRINGPavir.Ha00323.1.p6e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-22C2H2 family protein