PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_26561A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 25765.7 Da PI: 7.5624 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.9 | 2.3e-10 | 117 | 201 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+l ++ ++ +++l++p+++ae++ + ++l+ +d sg+ W ++++ +++r+ l+ +F+ ++++ +g Oropetium_20150105_26561A 117 FCKKLRTAETMGHSWLSIPRNHAEKClppldmtQRA--PVQELVAKDVSGQMWHFQHR-LVRPRRHRLQ--AADFATSKNIVAG 195 89****************************965333..3458***************6.6677788899..89*********** PP -EEEEE CS B3 78 DfvvFk 83 D +v+ Oropetium_20150105_26561A 196 DALVIL 201 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 113 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.11E-14 | 114 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.00E-11 | 115 | 203 | No hit | No description |
SMART | SM01019 | 0.0055 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-8 | 117 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MTSLEIADTS FYDSKDDKHI TEDLWYACAG SGATIPQVGE LVVYFPQGHL EQTGGVPKHL 60 HGVPSQILCR VLNVELKSKK DFVYAWLVLQ PELSDGLEAS GKMGLPPPVR RVNVPFFCKK 120 LRTAETMGHS WLSIPRNHAE KCLPPLDMTQ RAPVQELVAK DVSGQMWHFQ HRLVRPRRHR 180 LQAADFATSK NIVAGDALVI LREPPFMTEN ISMELISKDK DATTFSSCCN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-40 | 20 | 202 | 19 | 212 | Auxin response factor 1 |
4ldw_A | 2e-40 | 20 | 202 | 19 | 212 | Auxin response factor 1 |
4ldw_B | 2e-40 | 20 | 202 | 19 | 212 | Auxin response factor 1 |
4ldx_A | 2e-40 | 20 | 202 | 19 | 212 | Auxin response factor 1 |
4ldx_B | 2e-40 | 20 | 202 | 19 | 212 | Auxin response factor 1 |
4ldy_A | 1e-40 | 20 | 202 | 19 | 212 | Auxin response factor 1 |
4ldy_B | 1e-40 | 20 | 202 | 19 | 212 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_26561A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020261175.1 | 8e-47 | auxin response factor 2-like isoform X1 | ||||
Refseq | XP_020261177.1 | 8e-47 | auxin response factor 2-like isoform X2 | ||||
Swissprot | Q6YVY0 | 2e-46 | ARFG_ORYSJ; Auxin response factor 7 | ||||
TrEMBL | A0A287MFV3 | 3e-46 | A0A287MFV3_HORVV; Auxin response factor | ||||
STRING | Pavir.J07690.1.p | 3e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37743 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-42 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_26561A |
Publications ? help Back to Top | |||
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