PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26520A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 565aa    MW: 60272.2 Da    PI: 7.84
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26520AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS101.61.2e-311763812179
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.........s 74 
                                ++lL  cA av++g+l+++q+l   l elas +gd+++Rlaa+ ++ALa+rl+    ++  ++a+++ ++ + +          
  Oropetium_20150105_26520A 176 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRALARRLLPatVGPAAAAAVRVPPACD-EcpapaafagA 258
                                689**************************************************9423344444444444433.23554444432 PP

                       GRAS  75 seelaal....kl....fsevsPilkfshltaNqaIl..eavege......ervHiiDfdisqGlQWpaLlqaLa.sRp.egpp 140
                                      +    ++    f+evsP++++ + +aN aI+  +a++ +      + +H++D+++s+G+QWp+Ll++L+  R  ++pp
  Oropetium_20150105_26520A 259 ------DprlfRAalirFHEVSPWFTLPNALANAAIVgrQAAAAAgaadppRPLHVVDLGVSHGVQWPTLLESLTrLRGtAPPP 336
                                ......13333113478*******************733233222447777889*********************555578899 PP

                       GRAS 141 slRiTgvgspesg......skeeleetgerLakfAeelgvpfefn 179
                                s+R+T+v++++++      s+      +  L ++A+++++++ + 
  Oropetium_20150105_26520A 337 SVRLTVVAPANASpaapfsSAPPGYDFAPHLLRYARSIDLQLAIG 381
                                *********888889999989999999999999999999999875 PP
2GRAS60.53.5e-19424560233374
                       GRAS 233 slsPkvvvvveqeadh..nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetle 313
                                 l+P++vv++e ea     s++ + +f+  le  + +++s+ +a  +r+s+er+ +E+e  g +   +v  + a+     e +e
  Oropetium_20150105_26520A 424 XLNPDLVVLSELEAGAgaASTTAAGEFAARLELLWRFLESTaAAFKGRDSDERRLMEAE-AGTS---LVPDAAAA----GEGKE 499
                                69***********887435668899****************656667888999999998.4444...44444443....56789 PP

                       GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                 Wr+r+++aGF++++++++a+++ k+llrk++  g+++      +v l Wk++p+ ++S Wr
  Oropetium_20150105_26520A 500 AWRDRMMKAGFEEAAFGDEAVESTKSLLRKYD-GGWEMSAPAPGAVaLRWKGQPVSFCSLWR 560
                                ********************************.77999988776666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.676149540IPR005202Transcription factor GRAS
PfamPF035144.0E-29176381IPR005202Transcription factor GRAS
PfamPF035141.2E-16424560IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSMHASPCKL AASRMKAMNC HEQEHQEXXX XXXXXXTSNN GGGLDWLEDX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXAQTLSPPA APVSCSSPLL PAQLHASPSI ASPAVSSPSE  120
PSCSKKRKSP PVHRSTSSNG NQRRRTEPGX XXXXXXXXXG RGTGAGSDNR DLRWAEQLLN  180
PCAAAVEAGN LSRVQHLFYV LGELASFSGD ANHRLAAHGL RALARRLLPA TVGPAAAAAV  240
RVPPACDECP APAAFAGADP RLFRAALIRF HEVSPWFTLP NALANAAIVG RQAAAAAGAA  300
DPPRPLHVVD LGVSHGVQWP TLLESLTRLR GTAPPPSVRL TVVAPANASP AAPFSSAPPG  360
YDFAPHLLRY ARSIDLQLAI GHASSLDSVH GFATPGXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXLNPDLV VLSELEAGAG AASTTAAGEF AARLELLWRF LESTAAAFKG RDSDERRLME  480
AEAGTSLVPD AAAAGEGKEA WRDRMMKAGF EEAAFGDEAV ESTKSLLRKY DGGWEMSAPA  540
PGAVALRWKG QPVSFCSLWR PTRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-2617356285475Protein SHORT-ROOT
5b3h_B6e-2717356231421Protein SHORT-ROOT
5b3h_E6e-2717356231421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26520A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.11e-179nodulation-signaling pathway 1 protein
TrEMBLA0A1E5VYC70.0A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRINGGRMZM2G110067_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-56GRAS family protein