PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_26514A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 28779.4 Da PI: 5.0642 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41 | 4.5e-13 | 2 | 42 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++lv +++++G g+W + +++ g++R++k+c++rw++yl Oropetium_20150105_26514A 2 EDDILVSYIRKHGEGRWGSLPKRAGLKRCGKSCRLRWLNYL 42 9**************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 48 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ Oropetium_20150105_26514A 48 RGNISDDEEELIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 92 7899******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.1E-5 | 1 | 44 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.056 | 1 | 42 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-11 | 2 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.37E-9 | 2 | 42 | No hit | No description |
SuperFamily | SSF46689 | 1.49E-23 | 2 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-19 | 2 | 49 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.016 | 43 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 48 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 50 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-12 | 52 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MEDDILVSYI RKHGEGRWGS LPKRAGLKRC GKSCRLRWLN YLRPGIKRGN ISDDEEELIV 60 RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN TTLAKKVRGE AMISRSNSKQ QHRASTAAPP 120 ILLRSRPSSE PGKPAGDAAP DEAAAVPSPP EPNTSPPVRT KAMRCTARVP LAPADNGCCP 180 PPDGAEAVET APAAEVQQDY CSPDGGDLSI DLDFDMGDLY FLSPWRGEAG DAVVGADDQL 240 VVGEADLETL LLGPAGNDDV EFAWF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 2 | 97 | 34 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_26514A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | D88619 | 2e-80 | D88619.1 Oryza sativa mRNA for OSMYB3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465146.1 | 6e-81 | anthocyanin regulatory C1 protein | ||||
Refseq | XP_004986909.1 | 3e-81 | myb-related protein 308 | ||||
TrEMBL | A0A1E5WBQ0 | 2e-94 | A0A1E5WBQ0_9POAL; Anthocyanin regulatory C1 protein | ||||
STRING | Si038905m | 1e-80 | (Setaria italica) | ||||
STRING | Sb01g032770.1 | 2e-80 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 9e-53 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_26514A |