PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26478A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 106aa    MW: 11765.1 Da    PI: 9.0849
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26478AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.22.2e-271396189
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
                               +Ca+Ck+lrr+C++dCvl+pyfpa++p+++anvh +FG+sn+++ l++     r   +++++ eA++ra+dPvyG++gv ++ + +
  Oropetium_20150105_26478A 13 RCAGCKFLRRRCPHDCVLRPYFPATHPQRYANVHTVFGNSNITRWLQE-----RGPGADAIAAEAHWRAQDPVYGSTGVPQAARGD 93
                               6*********************************************99.....888899*******************98877666 PP

                     DUF260 87 leq 89
                                ++
  Oropetium_20150105_26478A 94 RCR 96
                               555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.61312105IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-251392IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MEADQQRGAT PTRCAGCKFL RRRCPHDCVL RPYFPATHPQ RYANVHTVFG NSNITRWLQE  60
RGPGADAIAA EAHWRAQDPV YGSTGVPQAA RGDRCRTDRA REETG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2214851288LOB family transfactor Ramosa2.1
5ly0_B2e-2214851288LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26478A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171546.12e-32LOB domain-containing protein 24-like
SwissprotQ9SHE91e-24LBD4_ARATH; LOB domain-containing protein 4
TrEMBLR7VZQ04e-31R7VZQ0_AEGTA; Uncharacterized protein
STRINGEMT015737e-32(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-27LOB domain-containing protein 4