PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_26444A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 401aa MW: 43222 Da PI: 8.6158 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.7 | 2.9e-13 | 175 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g Oropetium_20150105_26444A 175 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 225 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.069 | 113 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-16 | 175 | 234 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.08E-25 | 175 | 235 | No hit | No description |
Pfam | PF00847 | 9.3E-9 | 175 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-15 | 176 | 233 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-31 | 176 | 239 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.002 | 176 | 233 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-6 | 177 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-6 | 215 | 235 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence Send to blast |
MVLDLNAESP GDGGEAASPA SSSAAGGGGG GFFRFDLLDG SPDEEGLTSS PVVTRQLFPS 60 PPSLSPPGPV ASDGSPPPSS EVVTGPWTRG TAAMPAPSPG KRSRRGPRSR SSQYRGVTFY 120 RRTGRWESHI WGVDADINFD LKDYEDDLKQ MRNWTKEEFV QILRRQSTGI ARGSSKYRGV 180 TLHKCGRWEA RMGQLLGKKY IYLGLFDSEV EAARAYDRAA IRFNGKDSVT NFDPSAYDGY 240 APSELEKDVV DGDILDLNLK ISQPNVHNRK SDSILSALRS GGESPEGSTV IFPQQVNPQW 300 PVHSQSTSTT PQHTQVFSSP CPGFFVNYRE ASTRMGEKRP ELAGPSPFPP WAWQVQQDSP 360 VPSSLPATAA SSGFSTATGA GVPSTHPRPF AVGHRLPRKA * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_26444A |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459580.1 | 1e-149 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | Q8H443 | 1e-147 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | C5XDI6 | 1e-148 | C5XDI6_SORBI; Uncharacterized protein | ||||
STRING | Sb02g007000.1 | 1e-148 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.2 | 2e-70 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_26444A |
Publications ? help Back to Top | |||
---|---|---|---|
|