PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26419A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 286aa    MW: 32148 Da    PI: 5.683
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26419AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.5e-50211461128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelv++yL++++ g+  ++  +i+e+d+y+++PwdLp+++  +++ewyfF++rd+ky++g+r++ra+ +gyWk
  Oropetium_20150105_26419A  21 LPPGFRFHPTDEELVSDYLCARAGGRAPPV-PIIAELDLYRFDPWDLPARALFGRREWYFFTPRDRKYPNGSRPSRAAGTGYWK 103
                                79*************************999.88***************87778999**************************** PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg dk+v + +g++ g+kk Lvfy+g+ p+g+ktdW+mheyrl
  Oropetium_20150105_26419A 104 ATGADKPVAH-RGRTLGIKKALVFYHGKPPRGVKTDWIMHEYRL 146
                                **********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6117173IPR003441NAC domain
PROSITE profilePS5100558.57621173IPR003441NAC domain
PfamPF023652.7E-2522146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSATTTTATA RRRDAEAELN LPPGFRFHPT DEELVSDYLC ARAGGRAPPV PIIAELDLYR  60
FDPWDLPARA LFGRREWYFF TPRDRKYPNG SRPSRAAGTG YWKATGADKP VAHRGRTLGI  120
KKALVFYHGK PPRGVKTDWI MHEYRLADAA GRRKPGNGSL RLDDWVLCRL YHKKNEWEKM  180
QEQQQEEQEK EMEEASHSRS QSFGDTRTPE SEIDDADHIP ALGETGLPAI MPKEEVQDQD  240
LGGADDWFTG INLDDLQGLC PMPGDDLYSS MLMTPTAARG GGFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-94111795174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26419A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8098861e-167KR809886.1 Sorghum bicolor transcription factor 000584 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141629.21e-139uncharacterized protein LOC100273749
SwissprotQ7EZT11e-118NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A0A9D6V81e-150A0A0A9D6V8_ARUDO; Uncharacterized protein
STRINGGRMZM2G079632_P011e-138(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.16e-79NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]