PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26357A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 487aa    MW: 52283.9 Da    PI: 8.8048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26357AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09329368448
                                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAv 48 
                                +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+
  Oropetium_20150105_26357A 329 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAI 368
                                799***********************66......********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.7E-4142234IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.15E-12324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.068325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-10328368No hitNo description
Gene3DG3DSA:4.10.280.101.6E-11328368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7329368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSWSETDAAL FAAVLGRDAA HHLATTPPHV DGPATAELAP ELQARLHNLV ERGGAWTYAI  60
FWQESRAGSG HAVLGWGDGH CRDGGDGEAA AVGGAGEGRS VARKRVLLRL HELYGGGXXX  120
XXXXXXXXXL RLDRVTGAEM YFLASMYFTF PEGVGGPGRA LASRRHAWAA VDFDPHGAAA  180
AAAAPGWFVR ASLAQAAGLS TVVFLPCKGG VLELGSVVPV RETLDALRAI QSAFAVPPAA  240
PPPEEGTMIF GMDLSRCSQS PTAREAIIER HQLGGDNKEE EVVVFEQKKK LPPGPPPKSI  300
LEPNGGLEEQ RKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPKISKMDK  360
ASLLSDAIAX XXXXXXXXXX XGGGGRXXXX XXXXXXPTVE VKGTRDDEVV LRVTTPLYAH  420
PAARVFHAVR DARLSVVASD LAVGDDAVTH TLMLRAPPGP ERLTAEAVLA ALSRGTTRRE  480
RDTPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-21323369248Transcription factor MYC2
5gnj_B1e-21323369248Transcription factor MYC2
5gnj_E1e-21323369248Transcription factor MYC2
5gnj_F1e-21323369248Transcription factor MYC2
5gnj_G1e-21323369248Transcription factor MYC2
5gnj_I1e-21323369248Transcription factor MYC2
5gnj_M1e-21323369248Transcription factor MYC2
5gnj_N1e-21323369248Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310318RKPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26357A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456225.11e-175transcription factor bHLH13
RefseqXP_025819579.11e-175transcription factor bHLH13-like
TrEMBLA0A3L6SLM11e-176A0A3L6SLM1_PANMI; Transcription factor bHLH13-like
STRINGPavir.J12952.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.14e-60bHLH family protein