PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_25911A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | G2-like | ||||||||
Protein Properties | Length: 245aa MW: 27286.3 Da PI: 8.444 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.2 | 2.7e-11 | 36 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++a lm+vkgL++ hvkSHLQ+YR+ Oropetium_20150105_25911A 36 PRLRWTPELHLCFLRA-----------------LMNVKGLSIGHVKSHLQMYRS 72 89***********877.................5*******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-5 | 32 | 51 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.47E-7 | 33 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-9 | 52 | 73 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEESSKGTVD IAGGDSSRIR KTSSSSVRPY VRSKNPRLRW TPELHLCFLR ALMNVKGLSI 60 GHVKSHLQMY RSKKIDDSGQ VIAGLWRNQL QEGGQAYNLR HLSLHHAQTD SGTILHRHGI 120 GSKPYYYYYY STVDAGPLLR ARTPYAARAT TASSIPTTTF PQEYSSSQND QITNDHRRRI 180 FKKEDGNDDP LDLELALNIG PPRRENEEEE IRFCSCGKQG DDNGGDQEVE STATGALSLS 240 LFPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_25911A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037957 | 3e-33 | BT037957.1 Zea mays full-length cDNA clone ZM_BFb0204N03 mRNA, complete cds. | |||
GenBank | BT068440 | 3e-33 | BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321607.1 | 3e-67 | uncharacterized protein LOC8064764 | ||||
TrEMBL | A0A1E5VA20 | 2e-69 | A0A1E5VA20_9POAL; Uncharacterized protein | ||||
STRING | Sb05g000480.1 | 8e-69 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-24 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_25911A |