PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_25907A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23099.2 Da PI: 8.4052 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.4 | 1.4e-44 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+C+++Cv+apyfp e+p++fa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq Oropetium_20150105_25907A 16 PCASCKLLRRRCTQECVFAPYFPPEDPHRFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARLRDPVYGCVGAISYLQ 99 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 qq++ql+ +lal+k+e Oropetium_20150105_25907A 100 QQVSQLQMQLALAKAE 115 ************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.37 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-44 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAGSGSSGNS PSSVPPCASC KLLRRRCTQE CVFAPYFPPE DPHRFAIVHK VFGASNVSKM 60 LQELPVHQRA DAVSSLVYEA NARLRDPVYG CVGAISYLQQ QVSQLQMQLA LAKAEIRCVQ 120 MQQHDDGGQN NYGHYSTAAA PSSKQQQVQQ HMDGETICHS LITMQKKNGL TNALINSPSA 180 HHQQQLLSSL GSSGSTAMML REACLKKESL WA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 6 | 116 | 1 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 6 | 116 | 1 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_25907A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100852 | 9e-98 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661028.1 | 2e-86 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 7e-68 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A368S2P5 | 4e-85 | A0A368S2P5_SETIT; Uncharacterized protein | ||||
STRING | Si026864m | 1e-84 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-57 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_25907A |
Publications ? help Back to Top | |||
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