PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_25838A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 36822.4 Da PI: 7.3284 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 8.9e-06 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Oropetium_20150105_25838A 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.52E-5 | 81 | 106 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 82 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 5.0E-5 | 83 | 105 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MMLSDLSSDQ EATGSSSHGG DIASYALSPL FLAPTGATAP LLPLPPQLKL EQPRAGTKRK 60 RSQPGNPEVI ALSPRTLVAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSTPSSA 120 GGAASARQQG DAAAPPRKRV YVCPEPTCVH HDPTRKDSLL THRAFCDALA EESARLLAAA 180 HHNSSTITSI GGGSDDNNIL FPGSNSAPLF LPFSNPPPPL PATQNPNSLL FLHDQEAPLL 240 QQMQQIQHST YIDLPAPTVV STAGSIVAGD CVANTIASFG GGHSRLTRDF LGVDNGEVVE 300 ELQLPLCTTA AAAVPRTASC ATDLTRQYFG ERLPPVNETW SHNF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269|PubMed:18725639, ECO:0000269|PubMed:18774969, ECO:0000269|PubMed:18790997, ECO:0000269|PubMed:24280027, ECO:0000303|PubMed:19304997}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00673 | SELEX | Transfer from GRMZM2G011357 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_25838A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269|PubMed:25036785, ECO:0000269|PubMed:25573482, ECO:0000269|PubMed:25850808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF058757 | 2e-50 | AF058757.1 Zea mays zinc finger protein ID1 (id1) mRNA, complete cds. | |||
GenBank | BT053802 | 2e-50 | BT053802.1 Zea mays full-length cDNA clone ZM_BFb0184E01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467214.2 | 1e-102 | protein indeterminate-domain 12 | ||||
Swissprot | B1B534 | 5e-61 | EHD2_ORYSJ; Protein EARLY HEADING DATE 2 | ||||
TrEMBL | A0A1B6QKP8 | 1e-101 | A0A1B6QKP8_SORBI; Uncharacterized protein | ||||
STRING | EMT17041 | 2e-96 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13096 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-39 | indeterminate(ID)-domain 11 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_25838A |