PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25777A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 294aa    MW: 32767 Da    PI: 8.2411
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25777AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-1973168294
                                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                                +k+l +sdv+++gr+vlpkk ae++   ++++ +k l + d ++  +W++k++y  ++ks++yvl+ ++ +Fv+a++L++gDf+
  Oropetium_20150105_25777A  73 QKELRNSDVSQLGRIVLPKKEAEAYlpILISKDGKSLCMHDlLNAHTWTFKYRYwpNNKSRMYVLE-NTGDFVRAHDLQQGDFI 155
                                7999***********************555557789*****8888*********89999999**99.***************** PP

                                EEEE-SSSEE..EE CS
                         B3  81 vFkldgrsefelvv 94 
                                v++ d+ ++ ++v+
  Oropetium_20150105_25777A 156 VIYKDD-EKNRFVI 168
                                ***443.5554454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-2770178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-2171169IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-2771172No hitNo description
SMARTSM010194.2E-1772174IPR003340B3 DNA binding domain
PROSITE profilePS5086310.17972174IPR003340B3 DNA binding domain
PfamPF023625.4E-1673169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTGISKPRPY STSSSSGDSR PTGRVTRKRR SVRRGPRGAT RRPSAPRPLN ELDLNRAALD  60
PEQYAATLRV ILQKELRNSD VSQLGRIVLP KKEAEAYLPI LISKDGKSLC MHDLLNAHTW  120
TFKYRYWPNN KSRMYVLENT GDFVRAHDLQ QGDFIVIYKD DEKNRFVIRA KKAGDEQAAT  180
GPQLHEHISA IPPPASEVII HDYATPVAPE ATGIFAFMPQ ADESHEIFDG ILNSLPEIPV  240
ADVRYSDFFD PFSDCMDMAN PLNASHSVNL ATHFHDEKAG NSSFPNPKSG PLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-44681771110B3 domain-containing transcription factor FUS3
6j9b_D3e-44681771110B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530TRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25777A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969734.11e-152B3 domain-containing protein LFL1
SwissprotA4LBC01e-122LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLK3XRB81e-151K3XRB8_SETIT; Uncharacterized protein
STRINGSi004459m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-45B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]