PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25713A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 350aa    MW: 38425.7 Da    PI: 9.0663
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25713AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.6e-273887251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rie+++ rqvtfskRr g+lKKA+ELSvLCdaev +i+fs++g+ly ++s
  Oropetium_20150105_25713A 38 RIEDTTSRQVTFSKRRSGLLKKAFELSVLCDAEVGLIVFSPRGRLYQFAS 87
                               8***********************************************86 PP
2K-box32.43.9e-12901263672
                      K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                                 +llGe+L+s+s++eLq+Le qLe+sl++iR+kK   
  Oropetium_20150105_25713A  90 EKLLGEGLGSCSVQELQELEVQLEESLSSIRQKKAST 126
                                689*******************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-352988IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.2822989IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003185IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-273151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-253189IPR002100Transcription factor, MADS-box
PfamPF003191.3E-253885IPR002100Transcription factor, MADS-box
CDDcd002651.38E-303993No hitNo description
PRINTSPR004041.6E-275166IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.22161165IPR002487Transcription factor, K-box
PRINTSPR004041.6E-276687IPR002100Transcription factor, MADS-box
PfamPF014861.2E-989144IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVATSPAAPS EGVEQIVPEA PVVDGKKKGR RGRREMRRIE DTTSRQVTFS KRRSGLLKKA  60
FELSVLCDAE VGLIVFSPRG RLYQFASATE KLLGEGLGSC SVQELQELEV QLEESLSSIR  120
QKKASTVVVM DKAIGNQAGK VLKKGKKKQA KDELDRQKQA EKKRRRLEKA LANSAAIISE  180
LEKKKQKKKE EQQRLDEEGA AIAEAVALHV LIGEDSDEAC HLMLNKYRKC NHWDPSAGFD  240
FTQGTDIYPS DGLICTNHGY ASKGRWTDWE FGQALPSRGE VRDLQAPCYQ GTFHQSVTCP  300
GFMAAQAVSS LQIREEASDI TSPSRGAAAA TVVNRMLGAT NRTNLCSEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-143187258Myocyte-specific enhancer factor 2A
3mu6_B1e-143187258Myocyte-specific enhancer factor 2A
3mu6_C1e-143187258Myocyte-specific enhancer factor 2A
3mu6_D1e-143187258Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145165KKKQAKDELDRQKQAEKKRRR
2162166KRRRL
3163186RRRLEKALANSAAIISELEKKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25713A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951197.11e-112uncharacterized protein LOC101765570
RefseqXP_022678510.11e-112uncharacterized protein LOC101765570
TrEMBLA0A0E0N8J51e-132A0A0E0N8J5_ORYRU; Uncharacterized protein
STRINGORUFI02G00390.21e-133(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-23AGAMOUS-like 14