PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_25696A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 175aa MW: 19247.8 Da PI: 10.3033 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.6 | 2.3e-12 | 102 | 148 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++r r++kNRe+A rsR+RK+a++ eLe + L +eN +L + + Oropetium_20150105_25696A 102 DRRRQRMIKNRESAARSRARKQAYTNELELALARLRQENAMLVNLHQ 148 57899**********************************99975444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.5E-10 | 99 | 163 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.703 | 101 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-13 | 101 | 151 | No hit | No description |
SuperFamily | SSF57959 | 1.0E-9 | 103 | 150 | No hit | No description |
CDD | cd14707 | 1.62E-19 | 103 | 155 | No hit | No description |
Pfam | PF00170 | 3.7E-10 | 103 | 150 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 107 | 121 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEEVWRDYMS LQSTCATTPA VHSSPSPPSS YRDAGILQDF FTSTPQQPQT PPPLPPTVLS 60 LNFTLEFTFL GSGSSSTSSG DPATVIFPYA PAPRMTGSSG GDRRRQRMIK NRESAARSRA 120 RKQAYTNELE LALARLRQEN AMLVNLHQEL NVRLAMPVQV PNRLSVQRCR SAPL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_25696A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573205.1 | 1e-39 | protein FD | ||||
TrEMBL | A0A0A9K9C9 | 5e-45 | A0A0A9K9C9_ARUDO; Uncharacterized protein | ||||
STRING | BRADI3G00300.1 | 4e-39 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-14 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_25696A |