PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_25694A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 14654.4 Da PI: 8.0548 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.7e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Oropetium_20150105_25694A 24 YPCSFCKREFRSAQALGGHMNVH 46 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.88E-6 | 21 | 50 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.0E-7 | 24 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.007 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009755 | Biological Process | hormone-mediated signaling pathway | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MEREQQLPPW SYSCGFTAWP PRSYPCSFCK REFRSAQALG GHMNVHRRDR ARLRQGSPPP 60 PPPPVLPNLN YPPPPPQRSA DDGGIVGSKK RSWMSLELGL GSGGGYAAAT ATPAAASGPE 120 DEEDGLDLEL RLGVSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 6e-14 | 19 | 46 | 2 | 29 | superman protein |
2l1o_A | 6e-14 | 19 | 46 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_25694A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954553.1 | 3e-39 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A368PFI6 | 8e-38 | A0A368PFI6_SETIT; Uncharacterized protein | ||||
STRING | Si019050m | 3e-37 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 8e-22 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_25694A |