PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25608A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 333aa    MW: 37067.9 Da    PI: 8.2194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25608AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32105161259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Oropetium_20150105_25608A 105 DDGYNWRKYGQKVVKGSECPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 161
                                8**************************************99.***************8 PP
2WRKY108.82.5e-34261319159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Oropetium_20150105_25608A 261 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 319
                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29101163IPR003657WRKY domain
SuperFamilySSF1182908.76E-26103163IPR003657WRKY domain
SMARTSM007742.7E-35104162IPR003657WRKY domain
PfamPF031065.4E-25105161IPR003657WRKY domain
PROSITE profilePS5081123.307105163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37247321IPR003657WRKY domain
SuperFamilySSF1182901.44E-29253321IPR003657WRKY domain
PROSITE profilePS5081137.413256321IPR003657WRKY domain
SMARTSM007747.0E-40261320IPR003657WRKY domain
PfamPF031062.2E-26262319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVRRVHNSMF SLLKGGFGMS HQQVLAQVTA QASHSPLKMF DNMEQQSFSA AAPSSEAQQH  60
MNSAANMAGT SEMRTATANN DNSSFQSAEA SQRYQVNAPV DKPADDGYNW RKYGQKVVKG  120
SECPRSYYKC THPNCPVKKK VEHAEDGQIS EIIYKGKHNH QRPPNKRAKD GNPSAAEQIE  180
QSNDTTSVLS GAKRDQEAIY GISEQLSGFS DGDDMDDGQS RPHEVDDGDS ENKRRNIQIS  240
SQRTLSEPKI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPH PRSYYKCTFA GCNVRKHIER  300
ASSDPKAVIT TYEGKHNHEP PIYRIADTTP PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-4088321277Probable WRKY transcription factor 4
2lex_A6e-4088321277Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25608A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341960.0BT034196.1 Zea mays full-length cDNA clone ZM_BFc0028G06 mRNA, complete cds.
GenBankBT0538110.0BT053811.1 Zea mays full-length cDNA clone ZM_BFb0199A02 mRNA, complete cds.
GenBankBT0548220.0BT054822.1 Zea mays full-length cDNA clone ZM_BFb0078G18 mRNA, complete cds.
GenBankKJ7285320.0KJ728532.1 Zea mays clone pUT6837 WRKY transcription factor (WRKY62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442198.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-103WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLC5YP190.0C5YP19_SORBI; Uncharacterized protein
STRINGSb08g016240.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-101WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]