PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25512A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 298aa    MW: 32700.7 Da    PI: 5.6489
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25512AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.4e-082422752154
                                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Oropetium_20150105_25512A 242 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 275
                                469*****************************87 PP
2ELK28.34.1e-10196217122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELKh+L+++Y+++L+++++E++
  Oropetium_20150105_25512A 196 ELKHELKQGYKEKLVDIREEIL 217
                                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-192973IPR005540KNOX1
PfamPF037908.7E-183272IPR005540KNOX1
SMARTSM012566.4E-2780136IPR005541KNOX2
PfamPF037911.1E-1888135IPR005541KNOX2
PROSITE profilePS5121310.144196216IPR005539ELK domain
SMARTSM011889.2E-4196217IPR005539ELK domain
PfamPF037891.4E-6196217IPR005539ELK domain
PROSITE profilePS5007111.742216279IPR001356Homeobox domain
SMARTSM003895.1E-11218283IPR001356Homeobox domain
SuperFamilySSF466895.13E-16218283IPR009057Homeodomain-like
CDDcd000863.56E-12219280No hitNo description
Gene3DG3DSA:1.10.10.602.8E-25223280IPR009057Homeodomain-like
PfamPF059207.2E-18236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGAGEDAVAA MGGGGVVSVG AAEVEADAAR SKAEILAHPL YEQLLSAHVA CLRIATPVDQ  60
LPRIDAQLAQ SQRVIAKYSG LAAAGDDGRE LDQFMTHYVL LLCSFKEQLQ QHVRVHAMEA  120
VMACWEIEQN FQSLTGSALT GASPGEGTGA TMSDGEDDQA DSEANMYDAS LDGPDSMGFG  180
LPTESERSLM ERVRQELKHE LKQGYKEKLV DIREEILRKR RAGKLPGDTT STLKAWWQSH  240
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSSNVKTK RKSSMEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12219283872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25512A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234555.20.0homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N41e-178KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0LTE40.0A0A0E0LTE4_ORYPU; Uncharacterized protein
STRINGOPUNC08G08730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-163KNOTTED1-like homeobox gene 3